<div>Hello,<br><br> I understand this topic has been
dealt with previously, and I have read all the relative material from the
archives, but I am still having trouble deciphering what each column
corresponds to in the pull.pdo file for an AFM pull, with one pull group and
one reference group, and pulling in only the X direction. From what I've
read, the columns are as follows:<br><br>Time RefX RefY RefZ PullX PullY PullZ
SpringX SpringY SpringZ<br><br>...for a total of 10 columns. The problem
is that when I use the values of for the reference group and pull group at time
zero to calculate end to end distance, they do not correspond to my starting
pdb file after solvation. Any
thoughts?<br><br>______________________________<br><br>Venkatesh
Hariharan<br>Pennsylvania State University<br>Schreyer Honors
College<br>Undergraduate - Bioengineering<br><br>"You must be the change you
wish to see in the world."<br>--Mohandas Karamchand Gandhi<br><br><br></div>