<div dir="ltr">Hello,<br>I have ran some MD with GROMACS v3.3.3, and used the command "trjconv -f traj.xtc -o traj.pdb -s file.gro" to generate a pdb movie.<br>My simulation includes charged atoms in some residues, but the output pdb does not seem to include the formal charge data.<br>
My question is, is this a known issue (that GROMACS does not print the charge info. in the pdb), or, perhaps, it is a symptom of something I did wrongly?<br>(its not a big deal, but still - it would be nice to have this data directly in the movie)<br>
Thank you for the help, Omer.<br clear="all"> <br>Koby Levy research group,<br>Weizmann Institute of Science. <br><a href="http://www.weizmann.ac.il/sb/faculty_pages/Levy/">http://www.weizmann.ac.il/sb/faculty_pages/Levy/</a><br>
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