<table cellspacing="0" cellpadding="0" border="0" ><tr><td valign="top" style="font: inherit;">So how could i do this energy conservation,<br><br><div><br><span style="color: rgb(56, 83, 118); font-family: comic sans ms;">Ravi Datta Sharma</span></div> <div><span style="color: rgb(56, 83, 118); font-family: comic sans ms;">Lecturer,</span></div> <div><span style="color: rgb(56, 83, 118); font-family: comic sans ms;">Bioinformatics,</span><br style="color: rgb(56, 83, 118); font-family: comic sans ms;"><span style="color: rgb(56, 83, 118); font-family: comic sans ms;">Department of Microbiology,<br>CCS Unversity,<br>Meerut</span><span style="color: rgb(56, 83, 118); font-family: comic sans
ms;"><br> <br></span></div><br><br>--- On <b>Sat, 11/10/08, sudheer babu <i><sudheer.pbm07@gmail.com></i></b> wrote:<br><blockquote style="border-left: 2px solid rgb(16, 16, 255); margin-left: 5px; padding-left: 5px;">From: sudheer babu <sudheer.pbm07@gmail.com><br>Subject: [gmx-users] Re: Protein coming out of the box<br>To: gmx-users@gromacs.org<br>Date: Saturday, 11 October, 2008, 4:46 PM<br><br><div id="yiv1536783197"><div dir="ltr"><pre>Oh...Similar type of problem once I have got, so got reply from some one in archives that if use comm_grps= protein , protein will not come out of the water box.So
thats why I have suggested, If I say wrong answer regret for that<br>
<br>><i> Hi,<br></i>><i> Ravi<br></i>><i> Use comm_grps = protein in your .mdp file.<br></i>><i> <br></i>><i> <br></i>><i> 3. protein coming out of the box (ravi sharma)<br></i>><i> <br>
</i><br>No!<br><br>You will ruin energy conservation...<br><br>><i> <br></i>><i> Hello everyone<br></i>><i> <br></i>><i> my protein coming out of the box in final md how can i fix my<br></i>><i> protein in the middle of the box. can you help me out??<br>
</i>><i> </i></pre></div>
</div><pre>_______________________________________________<br>gmx-users mailing list gmx-users@gromacs.org<br>http://www.gromacs.org/mailman/listinfo/gmx-users<br>Please search the archive at http://www.gromacs.org/search before posting!<br>Please don't post (un)subscribe requests to the list. Use the <br>www interface or send it to gmx-users-request@gromacs.org.<br>Can't post? Read http://www.gromacs.org/mailing_lists/users.php</pre></blockquote></td></tr></table><br>
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