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<body class='hmmessage'><div style="text-align: left;">Hi,<br><br>Or even simpler, just from the command-line:<br>vmd conf.gro traj.trr<br>or<br>vmd conf.pdb traj.trr<br><br>Berk<br></div><br><br><hr id="EC_stopSpelling">Date: Tue, 14 Oct 2008 01:22:40 -0500<br>From: carlosjavierna@gmail.com<br>To: gmx-users@gromacs.org<br>Subject: Re: [gmx-users] Unable to view trajectory in pymol or vmd<br><br><div dir="ltr">Hi,<br>In VMD:<br><br>1. Load the *.gro file<br>2. Load the *.trr file<br><br>See the Amber basic workshop - tutorial 2 for more ideas:<br><br><a href="http://ambermd.org/tutorials/basic/tutorial2/" target="_blank">http://ambermd.org/tutorials/basic/tutorial2/</a><br>
<br>regards,<br>Carlos<br><br><br><br><br><br><div class="EC_gmail_quote">2008/10/14 vivek sharma <span dir="ltr"><<a href="mailto:viveksharma.iitb@gmail.com">viveksharma.iitb@gmail.com</a>></span><br><blockquote class="EC_gmail_quote" style="padding-left: 1ex;">
<div dir="ltr">Hi There,<br><br>I have few MD trajectory, I want to analyze them visually (other than ngmx option as it gives very few option).<br>I tried for opening those trajectories in vmd and pymol but not able to view them. It shows me the trajectory loaded, but not viewing anything.<br>
Is there any check to be doen for viewing trajectory in these visualization tools ?<br><br>Or is it because of the size of the trajectory as I am having trajectories of around 10 nsec.<br><br>Please suggest.<br><br>With Thanks,<br>
Vivek<br></div>
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