<div dir="ltr">Hi David,<br>Thanks for your response.<br>I was not loading any pdb file. Do I need to do so ?<br>& where ?<br><br>With Thanks,<br>Vivek<br><br><div class="gmail_quote">2008/10/14 David van der Spoel <span dir="ltr"><<a href="mailto:spoel@xray.bmc.uu.se">spoel@xray.bmc.uu.se</a>></span><br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;"><div><div></div><div class="Wj3C7c">vivek sharma wrote:<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
Hi There,<br>
<br>
I have few MD trajectory, I want to analyze them visually (other than ngmx option as it gives very few option).<br>
I tried for opening those trajectories in vmd and pymol but not able to view them. It shows me the trajectory loaded, but not viewing anything.<br>
Is there any check to be doen for viewing trajectory in these visualization tools ?<br>
<br>
Or is it because of the size of the trajectory as I am having trajectories of around 10 nsec.<br>
</blockquote>
<br></div></div>
did you load a pdb file too?<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;"><div class="Ih2E3d">
<br>
Please suggest.<br>
<br>
With Thanks,<br>
Vivek<br>
<br>
<br></div>
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-- <br>
David van der Spoel, Ph.D., Professor of Biology<br>
Molec. Biophys. group, Dept. of Cell & Molec. Biol., Uppsala University.<br>
Box 596, 75124 Uppsala, Sweden. Phone: +46184714205. Fax: +4618511755.<br>
<a href="mailto:spoel@xray.bmc.uu.se" target="_blank">spoel@xray.bmc.uu.se</a> <a href="mailto:spoel@gromacs.org" target="_blank">spoel@gromacs.org</a> <a href="http://folding.bmc.uu.se" target="_blank">http://folding.bmc.uu.se</a><br>
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