<table cellspacing="0" cellpadding="0" border="0" ><tr><td valign="top" style="font: inherit;">Hi there,<br>I would be glad if somebody let me know how I can simulate a Nanoparticle-protein complex by GROMACS.<br>Thank you very much.<br><br>Best,<br>J<br><br>Jahanshah Ashkani,<br>
PhD student of Biotechnology & Genetics,<br>
University of the Western Cape,<br>
Biotechnology Department,<br>
Private Bag X17,<br>
7735 Bellville,<br>
Cape Town,<br>
South Africa<br>
jashkani@mail.biotech.uwc.ac.za<br><br>--- On <b>Thu, 10/23/08, Abu Naser <i><likhonnaser@hotmail.com></i></b> wrote:<br><blockquote style="border-left: 2px solid rgb(16, 16, 255); margin-left: 5px; padding-left: 5px;">From: Abu Naser <likhonnaser@hotmail.com><br>Subject: RE: [gmx-users] spliting clusters.pdb<br>To: "Discussion list for GROMACS users" <gmx-users@gromacs.org><br>Date: Thursday, October 23, 2008, 5:08 AM<br><br><div id="yiv1368626862">
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<br>Hi Jochen,<br>
<br>
Thanks for your replay. I manage to do that using trjconv. However, I will keep your<br>
suggestion in my mind for future use.<br><br><br>
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<div> </div></div></div></div></div></div></div><br><br>> Date: Wed, 22 Oct 2008 18:04:01 +0200<br>> From: jhub@gwdg.de<br>> To: gmx-users@gromacs.org<br>> Subject: Re: [gmx-users] spliting clusters.pdb<br>> <br>> Abu Naser wrote:<br>> > Hi All,<br>> > <br>> > I have been wondering whether there is any tools for spliting clusters.pdb file into individual snapshots.<br>> <br>> If there is a TER between the structures, the shell command csplit may<br>> be useful for you.<br>> <br>> Jochen<br>> <br>> <br>> > <br>> > With regards,<br>> > <br>> > Abu<br>> > <br>> > <br>> > <br>> > <br>> > <br>> > <br>> > <br>> > _________________________________________________________________<br>> > Win an Xbox 360 or £200 Top Shop Vouchers <br>> > http://clk.atdmt.com/GBL/go/115454062/direct/01/<br>> > <br>> >
<br>> > ------------------------------------------------------------------------<br>> > <br>> > _______________________________________________<br>> > gmx-users mailing list gmx-users@gromacs.org<br>> > http://www.gromacs.org/mailman/listinfo/gmx-users<br>> > Please search the archive at http://www.gromacs.org/search before posting!<br>> > Please don't post (un)subscribe requests to the list. Use the <br>> > www interface or send it to gmx-users-request@gromacs.org.<br>> > Can't post? Read http://www.gromacs.org/mailing_lists/users.php<br>> <br>> <br>> -- <br>> ************************************************<br>> Dr. Jochen Hub<br>> Max Planck Institute for Biophysical Chemistry<br>> Computational biomolecular dynamics group<br>> Am Fassberg 11<br>> D-37077 Goettingen, Germany<br>> Email: jhub[at]gwdg.de<br>> Tel.: +49 (0)551 201-2312<br>>
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</div><pre>_______________________________________________<br>gmx-users mailing list gmx-users@gromacs.org<br>http://www.gromacs.org/mailman/listinfo/gmx-users<br>Please search the archive at http://www.gromacs.org/search before posting!<br>Please don't post (un)subscribe requests to the list. Use the <br>www interface or send it to gmx-users-request@gromacs.org.<br>Can't post? Read http://www.gromacs.org/mailing_lists/users.php</pre></blockquote></td></tr></table><br>