<div>hello everyone,</div>
<div> </div>
<div>pls tell me that whether we can use gromacs for simulating pdb with 3 or 4 residue.</div>
<div>As i had done it with 4 residue with blocking group. But then i got the error for rvdw and rlist as they should be nearer to cutoff value.</div>
<div>So instead of decreasing the value of rvdw. i increased my X, Y, Z coordinates.</div>
<div>Tell me whether i m correct or not.</div>
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<div>One more thing</div>
<div>whether we can apply position restraint to all the atoms in the file.whether it will have any impact on my output.</div>
<div>Silly Ouestion. But sorry for that.</div>
<div>How we can come to know that to which atom i add position restraint in posre.itp file.Sorry i don't Know about this</div>
<div>I read the manual but i m confused.</div>
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<div>Pls help me out</div>
<div> </div>
<div>Bhawana</div>