<html>
<head>
<style>
.hmmessage P
{
margin:0px;
padding:0px
}
body.hmmessage
{
font-size: 10pt;
font-family:Verdana
}
</style>
</head>
<body class='hmmessage'>
Hi,<br><br>That is strange.<br>This looks like a different box size than you mailed yesterday.<br>Could you mail me the tpr file that caused this error?<br><br>Berk<br><br><br><hr id="stopSpelling">Date: Wed, 19 Nov 2008 14:22:29 +0000<br>From: lastexile7gr@yahoo.de<br>Subject: RE: [gmx-users] gromacs 4.0.2 error in continuation to triclinic skew error<br>To: gmx-users@gromacs.org<br><br><table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td style="font-family: inherit; font-style: inherit; font-variant: inherit; font-weight: inherit; font-size: inherit; line-height: inherit; font-size-adjust: inherit; font-stretch: inherit;" valign="top">Hello,<br><br>the run didn't even start and I got this:<br><br>Initializing Domain Decomposition on 8 nodes<br>Dynamic load balancing: auto<br>Will sort the charge groups at every domain (re)decomposition<br>Minimum cell size due to bonded interactions: 1.000 nm<br>Scaling the initial minimum size with 1/0.8 (option -dds) = 1.25<br>Optimizing the DD grid for 8 cells with a minimum initial size of 1.250 nm<br>The maximum allowed number of cells is: X 2 Y 1 Z 4<br><br>-------------------------------------------------------<br>Program mdrun, VERSION 4.0.2<br>Source code file: domdec.c, line: 5842<br><br>Fatal error:<br>There is no domain decomposition for 8 nodes that is compatible with the given box and a minimum cell size of 1.25 nm<br>Change the number of nodes or mdrun option -rdd or -dds<br>Look in the log file for details on the domain
decomposition<br><br>Should I run on two nodes as before? Change something else?<br><br>Regards!<br><br></td></tr></tbody></table><br><br /><hr />Express yourself instantly with MSN Messenger! <a href='http://clk.atdmt.com/AVE/go/onm00200471ave/direct/01/' target='_new'>MSN Messenger</a></body>
</html>