HI Mark,<br>thanks for your reply.....<br>I have gone through the g_hbond -h, and have plotted hbnum.xvg using -num, which gives me the plot of the number of h_bonds with respect to time, but can I find out the duration of bond in percent of the whole trajectory time ?<br>
Please help me if there is such an option in the same.<br><br>With thanks,<br>Vivek<br><br><br><div class="gmail_quote">2008/11/20 Mark Abraham <span dir="ltr"><<a href="mailto:Mark.Abraham@anu.edu.au">Mark.Abraham@anu.edu.au</a>></span><br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;"><div><div></div><div class="Wj3C7c">vivek sharma wrote:<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
Hi All,<br>
I am analyzing the h-bond information for a mdrun using g_hbond. Can I know the % of trajectory time for which a bond between particular residue was existing?<br>
<br>
If anybody have tried such option please suggest me a way to do so.<br>
</blockquote>
<br></div></div>
Have you started with reading g_hbond -h?<br>
<br>
Mark<br>
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