<html><head><style type="text/css"><!-- DIV {margin:0px;} --></style></head><body><div style="font-family:times new roman,new york,times,serif;font-size:12pt"><div>Dear Berk,<br>This works perfectly with new -sys option! Could you please commit this change?<br>I'm starting to think that ordinary users can really improve the quality of Gromacs now ;)<br><br>Semen<br></div><div style="font-family: times new roman,new york,times,serif; font-size: 12pt;"><br><div style="font-family: times new roman,new york,times,serif; font-size: 12pt;"><font size="2" face="Tahoma"><hr size="1"><b><span style="font-weight: bold;">From:</span></b> Berk Hess <gmx3@hotmail.com><br><b><span style="font-weight: bold;">To:</span></b> Discussion list for GROMACS users <gmx-users@gromacs.org><br><b><span style="font-weight: bold;">Sent:</span></b> Thursday, November 27, 2008 12:56:26 PM<br><b><span style="font-weight: bold;">Subject:</span></b> RE: [gmx-users] List of
all bonds form tpr file?<br></font><br>
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Hi,<br><br>The format that is dumped by gmxdump is now the processed topology.<br>The bonded interactions are now only stored per molecule type.<br><br>I have made a option -sys to gmxdump, the source code is attached.<br>Could you try if this does what you want and report back?<br><br>Berk<br><br><br><hr>Express yourself instantly with MSN Messenger! <a rel="nofollow" target="_blank" href="http://clk.atdmt.com/AVE/go/onm00200471ave/direct/01/">MSN Messenger</a></div></div></div><br>
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