Thank you Justin for your prompt response.<br><br>I installed Gromacs in the home directory of Cygwin.<br>Actually, I can't fine the bin subdirectory in the gromacs directory.<br>(I also can't find GMXRC anywhere.)<br>
Does this mean Gromacs cannot be installed correctly?<br>Do I have to install gromacs again?<br><br>Hideya<br><br><br><div class="gmail_quote">2008/12/16 Justin A. Lemkul <span dir="ltr"><<a href="mailto:jalemkul@vt.edu">jalemkul@vt.edu</a>></span><br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;"><div class="Ih2E3d"><br>
<br>
Hideya Nakamura wrote:<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
Hello Mark and Justin,<br>
<br>
Thank you very much for your responce.<br>
I edited the .bashrc file which is in my home directory.<br>
I opened .bashrc file using vi and added "source /usr/local/gromacs/bin/GMXRC" at the last line.<br>
And then, I started Cygwin again. However, an error mesage (bash: /usr/local/gromacs/bin/GMXRC: No such file or directory) is showed when I start Cygwin. In addition, when I enter the command "luck" for gromacs, I can't see the correct responce (i.e. "Whatever Happened to Pong ?" (F. Black))<br>
Could you please tell me your suggestion?<br>
I am using Cygwin on Windows Vista Enterprise.<br>
</blockquote>
<br></div>
Where did you install Gromacs? The GMXRC script should be in the bin subdirectory of whatever prefix you specified during configuration. If your environment is finding luck, then try "which luck" to locate the PATH to Gromacs.<br>
<br>
-Justin<br>
<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
<br>
Hideya<br>
<br>
<br>
2008/12/15 Mark Abraham <<a href="mailto:Mark.Abraham@anu.edu.au" target="_blank">Mark.Abraham@anu.edu.au</a> <mailto:<a href="mailto:Mark.Abraham@anu.edu.au" target="_blank">Mark.Abraham@anu.edu.au</a>>><div class="Ih2E3d">
<br>
<br>
Hideya Nakamura wrote:<br>
<br>
Hello,<br>
<br>
I try to install GROMACS using Cygwin on my Windows PC.<br>
<br>
I have already installed fftw, and then I will install GROMACS<br>
based on a instruction on <a href="http://wiki.gromacs.org" target="_blank">wiki.gromacs.org</a><br>
<<a href="http://wiki.gromacs.org" target="_blank">http://wiki.gromacs.org</a>> <<a href="http://wiki.gromacs.org/" target="_blank">http://wiki.gromacs.org/</a>><br>
(<a href="http://wiki.gromacs.org/index.php/Cygwin_HOWTO" target="_blank">http://wiki.gromacs.org/index.php/Cygwin_HOWTO</a>).<br>
<br>
<br>
In this instruction, there is a description "#6 Edit your login<br>
files to source /usr/local/gromacs/bin/GMXRC<br>
<br>
(or manually add /usr/local/gromacs/man to the MANPATH and check<br>
that /usr/local/bin is in the PATH)."<br>
<br>
However, I can't edit my log in files. Could someone give me how<br>
to edit my log in files by using Cygwin?<br>
<br>
<br>
Probably you're using bash shell, so in your home directory, edit<br>
the file .bashrc and add the line "source<br>
/usr/local/gromacs/bin/GMXRC" (or as appropriate for wherever you<br>
installed GROMACS), and then open a new shell. This way the GROMACS<br>
environment will always be configured right for you.<br>
<br>
Mark<br>
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<br><div class="Ih2E3d">
-- <br>
========================================<br>
<br>
Justin A. Lemkul<br>
Graduate Research Assistant<br>
Department of Biochemistry<br>
Virginia Tech<br>
Blacksburg, VA<br>
jalemkul[at]<a href="http://vt.edu" target="_blank">vt.edu</a> | (540) 231-9080<br>
<a href="http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin" target="_blank">http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin</a><br>
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