Dear all,<br> <br><br>Am trying for a simulation with polymers on a lipid bilayer.when i give the entire polymer file which consists of 228 atoms to prodrg server for generating itp files its taking only a block of polymer as input and generating itp files for that polymer alone.I have two different monomer units in my system.I tried to generate itp files for these two separetly and included that in my top file.The thing is it is ,considering them as two separate sytem so that connectivity between these two are missing in the bonded information .<br>
<br>Is there anyway to get a topology files for entire system?i tried using usual commands by including in rtp entries..but thats not helpful.Please give me a detailed solution on this.<br><br>I have a psf files in hand for that polymer.how to convert a psf file to top file..are there any scripts available.<br>
<br>Please let me know in detail about this.Thanks in advance.<br><br>-varsha<br>