<table cellspacing="0" cellpadding="0" border="0" ><tr><td valign="top" style="font: inherit;"><pre>From: [EMAIL PROTECTED] [EMAIL PROTECTED] On Behalf Of Alif M Latif<br>Sent: 02 May 2008 09:42<br>To: gmx-users@gromacs.org<br>Subject: [gmx-users] Plotting B-factor<br><br>Dear GROMACS users and developers,<br><br>I want to plot B-factor of a protein structure against residue. How can I do <br>that?. Using option -oq in g_rmsf only produce bfac.pdb which is in .pdb file <br>and assigned at each atom. Is there another way I can get the plot B-factor vs <br>residue?. Any link to example or tutorial will be very helpful.<br>Comments and Suggestions are greatly appreciated. Thank you.<br><br>Muhammad Alif Mohammad Latif<br>Department of Chemistry<br>Faculty of Science<br>Universiti Putra Malaysia<br>43400 UPM Serdang, Selangor<br>MALAYSIA<br></pre><br><br>--- On <b>Wed, 2/4/09, David van der Spoel <i><spoel@xray.bmc.uu.se></i></b> wrote:<br><blockquote
style="border-left: 2px solid rgb(16, 16, 255); margin-left: 5px; padding-left: 5px;">From: David van der Spoel <spoel@xray.bmc.uu.se><br>Subject: Re: [gmx-users] analyzing beta factor<br>To: "Discussion list for GROMACS users" <gmx-users@gromacs.org><br>Date: Wednesday, February 4, 2009, 2:16 AM<br><br><pre>özge kül wrote:<br>> Hi users,<br>> <br>> I want to plot beta factor versus residue number plot at the analyzing<br>part.I read manual and search in the web but I could not find a reasonable<br>result for this plot.I wonder if anybody know about it.<br>> <br>What is the beta factor?<br><br><br>> Thank you,<br>> Özge<br>> <br>> <br>> <br>> ------------------------------------------------------------------------<br>> <br>> _______________________________________________<br>> gmx-users mailing list gmx-users@gromacs.org<br>> http://www.gromacs.org/mailman/listinfo/gmx-users<br>> Please
search the archive at http://www.gromacs.org/search before posting!<br>> Please don't post (un)subscribe requests to the list. Use the www<br>interface or send it to gmx-users-request@gromacs.org.<br>> Can't post? Read http://www.gromacs.org/mailing_lists/users.php<br><br><br>-- David van der Spoel, Ph.D., Professor of Biology<br>Molec. Biophys. group, Dept. of Cell & Molec. Biol., Uppsala University.<br>Box 596, 75124 Uppsala, Sweden. Phone: +46184714205. Fax: +4618511755.<br>spoel@xray.bmc.uu.se spoel@gromacs.org http://folding.bmc.uu.se<br>_______________________________________________<br>gmx-users mailing list gmx-users@gromacs.org<br>http://www.gromacs.org/mailman/listinfo/gmx-users<br>Please search the archive at http://www.gromacs.org/search before posting!<br>Please don't post (un)subscribe requests to the list. Use the www interface<br>or send it to gmx-users-request@gromacs.org.<br>Can't post? Read
http://www.gromacs.org/mailing_lists/users.php<br></pre></blockquote></td></tr></table><br>