<html><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">What do you mean by directions?<div><br></div><div>in your topology file you have to include the file martini_v2.1.itp</div><div>as you would do for any other force field! </div><div> <br><div><div>On Feb 16, 2009, at 11:07 AM, bhf70 wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0; "><div><div>It is possible to set an example ?</div><div> </div><div> </div><div>bhf70 wrote:</div><div>> Could you tell me, please.</div><div>> </div><div>> What's directions need the programm pdb2gmx to use external .itp files, </div><div>> for example martini_v2.1.itp (Coarse Grained Force Field)?</div><div>> </div><div>> How is it to do ?</div><div> </div><div>There should be instructions accompanying that force field wherever you </div><div>got it from.</div><div> </div><div>There's some general information here </div><div><a href="http://wiki.gromacs.org/index.php/Include_File_Mechanism">http://wiki.gromacs.org/index.php/Include_File_Mechanism</a></div><div> </div><div>Mark</div><div>_______________________________________________</div><div>gmx-users mailing list <a href="mailto:gmx-users@gromacs.org">gmx-users@gromacs.org</a></div><div><a href="http://www.gromacs.org/mailman/listinfo/gmx-users">http://www.gromacs.org/mailman/listinfo/gmx-users</a></div><div>Please search the archive at <a href="http://www.gromacs.org/search before posting!">http://www.gromacs.org/search before posting!</a></div><div>Please don't post (un)subscribe requests to the list. Use the </div><div>www interface or send it to <a href="mailto:gmx-users-request@gromacs.org">gmx-users-request@gromacs.org</a>.</div><div>Can't post? Read <a href="http://www.gromacs.org/mailing_lists/users.php">http://www.gromacs.org/mailing_lists/users.php</a></div><div>.</div>_______________________________________________<br>gmx-users mailing list <a href="mailto:gmx-users@gromacs.org">gmx-users@gromacs.org</a><br><a href="http://www.gromacs.org/mailman/listinfo/gmx-users">http://www.gromacs.org/mailman/listinfo/gmx-users</a><br>Please search the archive at<span class="Apple-converted-space"> </span><a href="http://www.gromacs.org/search">http://www.gromacs.org/search</a><span class="Apple-converted-space"> </span>before posting!<br>Please don't post (un)subscribe requests to the list. Use the<span class="Apple-converted-space"> </span><br>www interface or send it to<span class="Apple-converted-space"> </span><a href="mailto:gmx-users-request@gromacs.org">gmx-users-request@gromacs.org</a>.<br>Can't post? Read<span class="Apple-converted-space"> </span><a href="http://www.gromacs.org/mailing_lists/users.php">http://www.gromacs.org/mailing_lists/users.php</a></div></span></blockquote></div><br></div></body></html>