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Hi,<br><br>Your question is too vague for me to answer.<br>What do you mean with "all the molecules"?<br>And what do you mean with information?<br><br>Every node knows the topology of the whole system.<br>But each node only knows the coordinates and velocities of its local atoms<br>plus the coordinates of some atoms of neighboring nodes.<br><br>Berk<br><br>> Date: Mon, 16 Feb 2009 22:45:43 +0800<br>> From: xuji@home.ipe.ac.cn<br>> To: gmx-users@gromacs.org<br>> Subject: [gmx-users] One question about Domain decomposition<br>> <br>> <br>> Hi all Gromacs users:<br>> <br>> These days I read the codes about domain decomposition of Gromcas-4.0. <br>> It seems that every node which is used to deal with one real space <br>> domain has all of the molecules' information as in the particle decomposition. <br>> Is my comprehension right? And if it's wrong how is the molecules' <br>> information stored in domain decomposition of Gromacs-4.0 ?<br>>
; <br>> Appreciate any help in advance!<br>> <br>> Best <br>> wishes!<br>> <br>> <br>> xuji<br>> xuji@home.ipe.ac.cn<br>> 2009-02-16<br><br /><hr />Express yourself instantly with MSN Messenger! <a href='http://clk.atdmt.com/AVE/go/onm00200471ave/direct/01/' target='_new'>MSN Messenger</a></body>
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