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Hi,<br><br>I would help a lot if you would tell us what you are trying to accomplish.<br><br>When charge groups move from one node to an other, only<br>the global charge group index is communicated (and of course<br>x and v of the atoms in the cg). Since every node knows<br>the global topology it can figure out all the properties of the atoms<br>in for the new cg.<br><br>Berk<br><br>> Date: Tue, 17 Feb 2009 15:19:47 +0800<br>> From: xuji@home.ipe.ac.cn<br>> To: gmx-users@gromacs.org<br>> Subject: [gmx-users] RE:RE: One question about Domain decomposition<br>> <br>> Hi <br>> <br>> Thank you for your reply, Berk. I mean that every node has <br>> the topology of the whole system. Originally I thought every <br>> node has the positions and other properties(information in my <br>> last e-mail) of the atoms. I made a mistake obviously. <br>> But now, I don't know how do you store the information of the <br>> atoms. How do you orgnize the local
home atoms and atoms <br>> which communicated from neighbour nodes? I think the charge <br>> groups' indices are not continuous in one local node, so I<br>> cann't understand the way you store the atoms' information.<br>> Can you explain to me in detail? Or give me a sketch map of<br>> your method? <br>> <br>> Thank you!<br>> <br>> Best<br>> wishes!<br>> <br>> <br>> xuji<br>> xuji@home.ipe.ac.cn<br>> 2009-02-17<br><br /><hr />Express yourself instantly with MSN Messenger! <a href='http://clk.atdmt.com/AVE/go/onm00200471ave/direct/01/' target='_new'>MSN Messenger</a></body>
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