<br><br><div class="gmail_quote">On Fri, Feb 20, 2009 at 2:45 PM, nitu sharma <span dir="ltr"><<a href="mailto:sharmanitu35@gmail.com">sharmanitu35@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
Dear All,<br><br> I have successfully insstalled gromacs on my 32 bit i686 linux system but when I give the mdrun command for running gromacs on my system the output is like this<br><br>"mdrun: error while loading shared libraries: /usr/local/gromacs/lib/libmd.so.5: cannot restore segment prot after reloc: Permission denied."<br>
</blockquote><br>This is most likely due to SElinux policies. Since you haven't mentioned the build of linux you are using, you can try the following:<br><br> - As root, change "#setenforce 0" in ''/etc/selinux/config'' and reboot.<br>
<br>However, if you are using Fedora, go to Administration->Security Level and Firewall. There, in the SELinux
Tab, go to Compatibility and enable the checkbox for "Allow the use of
shared libraries with Text Relocation". Then click ok.<br><br><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">could you please let me know what exactly the problem is in my installtion and what is the solution of this problem.<br>
<br>Thank you very much for taking out your time for my consideration.<br><br>Nitu Sharma<br><br>
Structural biology lab <br>School of life Sciences<br>Jawaherlal Nehru University<br>New Delhi, India.<br><br><br>
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