Dear Prasun,<br><br>I think you can get the help of Chem 3D for fixing this problem. First you have to generate the topology with Chem 3D then get the gromacs format with PRODRG server of the same.<br><br>I hope it will help you,<br>
with regards<br>anil<br><br><br><div class="gmail_quote">On Mon, Mar 2, 2009 at 2:21 PM, prasun kumar <span dir="ltr"><<a href="mailto:prasun30@gmail.com">prasun30@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
respected all <br><br>I m tryin to generate a topology file for dimethylated lysine using PRODRG server,but I found that its not working...........can you plz help me in gettin some another servers or any method...........<br>
<br>is it possible to change gromacs topology file to charmm topology file<br>thanx in advance<br><br clear="all">PRASUN (ASHOKA)<br>
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