Then what should I do?<br><br>
<div class="gmail_quote">2009/3/3 Justin A. Lemkul <span dir="ltr"><<a href="mailto:jalemkul@vt.edu">jalemkul@vt.edu</a>></span><br>
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<div class="im"><br><br>Justin A. Lemkul wrote:<br><br>
<blockquote class="gmail_quote" style="PADDING-LEFT: 1ex; MARGIN: 0px 0px 0px 0.8ex; BORDER-LEFT: #ccc 1px solid">
<blockquote class="gmail_quote" style="PADDING-LEFT: 1ex; MARGIN: 0px 0px 0px 0.8ex; BORDER-LEFT: #ccc 1px solid">Specifying -missing in pdb2gmx doesn't work.<br></blockquote></blockquote><br></div>Also, don't do this. Note from the pdb2gmx documentation that this is "dangerous." You will end up with incomplete amino acids, fractional charges, and a completely unrealistic model.<br>
<font color="#888888"><br>-Justin</font>
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<div class="h5"><br><br>-- <br>========================================<br><br>Justin A. Lemkul<br>Graduate Research Assistant<br>ICTAS Doctoral Scholar<br>Department of Biochemistry<br>Virginia Tech<br>Blacksburg, VA<br>
jalemkul[at]<a href="http://vt.edu/" target="_blank">vt.edu</a> | (540) 231-9080<br><a href="http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin" target="_blank">http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin</a><br>
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