Look at the last line of your output gro file. It will have the box dimensions.<br><br><div class="gmail_quote">On Wed, Mar 11, 2009 at 10:36 PM, Mark Abraham <span dir="ltr"><<a href="mailto:Mark.Abraham@anu.edu.au">Mark.Abraham@anu.edu.au</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;"><div class="im">naimah haron naimah wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
Dear all...<br>
How to obtain the height of the box after MD simulation finish? This is because, during simulation, I didn't put size of my box. The reason why I didn't put the size because I want put the molecule in random displacement to avoid bottlenecks. So the command is<br>
editconf -f cat125.gro -o cat125_ed.gro -bt cubic<br>
</blockquote>
<br></div>
See <a href="http://www.gromacs.org/documentation/reference/online/gro.html" target="_blank">http://www.gromacs.org/documentation/reference/online/gro.html</a> for information about your box vectors.<br>
<br>
Mark<br>
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</blockquote></div><br><br clear="all"><br>-- <br>Ilya Chorny Ph.D.<br><br>