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<DIV><FONT face=Calibri>I want to simulate a protein complex using a triclinic
box, because it reduce my system size in 60%, and consequently the
computing time. I have read that using a triclinic box can give problems for a
long MD if the peptide has a whirl, but I don´t know if it is a
problem for a complex of ~ 530 aa (protein 1: 376 aa, protein 2: 132
aa, protein 3: 20 aa, complex size 64x64x104 Angstroms) surrounded by 12
Ângstroms of water. I want to run the MD simulating 20 ns.</FONT></DIV>
<DIV><FONT face=Calibri>Best regards,</FONT></DIV>
<DIV><FONT face=Calibri>Lucio Montero</FONT></DIV>
<DIV><FONT face=Calibri></FONT> </DIV>
<DIV><FONT
face=Calibri>--------------------------------------------------------------------------------------------------------------------------------</FONT></DIV>
<DIV><FONT face=Calibri>Lucio Ricardo Montero Valenzuela<BR>Laboratorio del Dr.
Federico Sánchez<BR>Ext. 27666<BR>Departamento de Biología Molecular de
Plantas<BR>Instituto de Biotecnología, UNAM<BR>Cuernavaca, Morelos,
62210<BR></DIV></FONT></BODY></HTML>