Dear all,<br><br> I am using DMPC lipid bilayer from teleman sir website to insert my protein in this lipid bilayer .I have done this by using command genbox. After that when I have run the command -<br>
pdb2gmx -f tap-in-dmpc.pdb -o tap-in-dmpc.gro -p tap-in-dmpc.top -i tap-in-dmpc-itp -ff oplsaa<br><br>Error like this-<br><br>There are 0 hydrogen bonds<br>Warning: 'DMP' not found in residue topology database, trying to use 'DMSO'<br>
<br>-------------------------------------------------------<br>Program pdb2gmx, VERSION 4.0.3<br>Source code file: pdb2gmx.c, line: 429<br><br>Fatal error:<br>Atom C1 in residue DMSO 1 not found in rtp entry with 10 atoms<br>
while sorting atoms<br>-------------------------------------------------------<br>so please tell me how can I add DMP in residue topology database if anyone has knowledge about this. And please if also u know about any site of lipid bilayer from where i can download lipid bilayer then let me know.<br>
<br>thanks in advance<br><br><br>Nitu Sharma<br><br>School of life siences<br>Jawaherlal Nehru University<br>New Delhi ,India<br><br><br><br><br><br><br><br><br><br><br><br>-------------------------------------------------------<br>
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