The Gromacs tutorial is a good place for us who is stating. Another place is the Gromacs wiki which has a beginner section (<a href="http://wiki.gromacs.org/index.php/Beginners">http://wiki.gromacs.org/index.php/Beginners</a>). In this local, it's possible you to see some videos.<br>
<br>I suggest for you read the online manual where has the flow chart and get started sections (<a href="http://www.gromacs.org/component/option,com_wrapper/Itemid,192/">http://www.gromacs.org/component/option,com_wrapper/Itemid,192/</a>).<br>
<br>Regards,<br><br clear="all">--<br>Rodrigo Antonio Faccioli<br>Ph.D Student in Electrical Engineering<br>University of Sao Paulo - USP<br>Engineering School of Sao Carlos - EESC<br>Department of Electrical Engineering - SEL<br>
Intelligent System in Structure Bioinformatics<br><a href="http://laips.sel.eesc.usp.br">http://laips.sel.eesc.usp.br</a><br>Phone: 55 (16) 3373-9366 Ext 229<br>Curriculum Lattes - <a href="http://lattes.cnpq.br/1025157978990218">http://lattes.cnpq.br/1025157978990218</a><br>
<br><br><div class="gmail_quote">On Wed, May 13, 2009 at 7:24 PM, Joseph Johnson <span dir="ltr"><<a href="mailto:helstreak@hotmail.com">helstreak@hotmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
<div>
Are there any good tutorials that start from the very beginning, like assuming you only have a .pdb file? It seems that most of the tutorials I've found have already generated the files you need and then all you have to do is punch in some commands. Where can I learn to actually write the molecular dynamics input file and all that good stuff?<br>
<br>Thanks for your time and help,<br>Casey<br><br><hr>Windows Live™: Keep your life in sync. <a href="http://windowslive.com/explore?ocid=TXT_TAGLM_BR_life_in_synch_052009" target="_blank">Check it out.</a></div>
<br>_______________________________________________<br>
gmx-users mailing list <a href="mailto:gmx-users@gromacs.org">gmx-users@gromacs.org</a><br>
<a href="http://www.gromacs.org/mailman/listinfo/gmx-users" target="_blank">http://www.gromacs.org/mailman/listinfo/gmx-users</a><br>
Please search the archive at <a href="http://www.gromacs.org/search" target="_blank">http://www.gromacs.org/search</a> before posting!<br>
Please don't post (un)subscribe requests to the list. Use the<br>
www interface or send it to <a href="mailto:gmx-users-request@gromacs.org">gmx-users-request@gromacs.org</a>.<br>
Can't post? Read <a href="http://www.gromacs.org/mailing_lists/users.php" target="_blank">http://www.gromacs.org/mailing_lists/users.php</a><br></blockquote></div><br>