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<p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";
color:#1F497D'>http://wiki.gromacs.org/index.php/Errors#Residue_.27XXX.27_not_found_in_residue_topology_database<o:p></o:p></span></p>
<p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";
color:#1F497D'><o:p> </o:p></span></p>
<p class=MsoNormal><span style='font-size:10.0pt;color:#1F497D'>Catch ya,<br>
<br>
Dr. Dallas Warren<br>
Department of Pharmaceutical Biology and Pharmacology<br>
Pharmacy and Pharmaceutical Sciences, Monash University<br>
381 Royal Parade, Parkville VIC 3010<br>
dallas.warren@pharm.monash.edu.au<br>
+61 3 9903 9167<br>
---------------------------------<br>
When the only tool you own is a hammer, every problem begins to resemble a
nail.</span><span style='color:#1F497D'> </span><span style='font-size:11.0pt;
font-family:"Calibri","sans-serif";color:#1F497D'><o:p></o:p></span></p>
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<p class=MsoNormal><b><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif"'>From:</span></b><span
style='font-size:10.0pt;font-family:"Tahoma","sans-serif"'>
gmx-users-bounces@gromacs.org [mailto:gmx-users-bounces@gromacs.org] <b>On
Behalf Of </b>nitu sharma<br>
<b>Sent:</b> Wednesday, 13 May 2009 5:25 PM<br>
<b>To:</b> gmx-users@gromacs.org<br>
<b>Subject:</b> [gmx-users] problem in simulation of DNA-protein complex<o:p></o:p></span></p>
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<p class=MsoNormal><o:p> </o:p></p>
<p class=MsoNormal>Dear all<br>
<br>
I am getting problem in running pdb2gmx command on DNA_protein file . The
prblem is --------------------------------------------------------<br>
Program pdb2gmx, VERSION 4.0.3<br>
Source code file: resall.c, line: 426<br>
<br>
Fatal error:<br>
Residue 'T' not found in residue topology database<br>
<br>
So , actually I am unable to understand what should I do to solve this .<br>
<br>
Is it possible to get DNA.itp file from anywhere .If anyone have Idea about
this please help me.<br>
<br>
I really will be very thankful for him/her.<br>
<br>
Nitu sharma<o:p></o:p></p>
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