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Hi,<br><br>g_traj can write |f| or components of f in the b-factor field of a pdb file.<br>I guess VMD can read and display that.<br>I don't know if that will fulfill your needs.<br><br>Berk<br><br>> Date: Wed, 20 May 2009 00:19:59 +1000<br>> From: Mark.Abraham@anu.edu.au<br>> To: gmx-users@gromacs.org<br>> Subject: Re: [gmx-users] .trr forces into VMD<br>> <br>> Matteus Lindgren wrote:<br>> > Hi all<br>> > <br>> > <br>> > <br>> > I am looking for a way to import forces from a gromacs run into VMD for <br>> > analysis. From a mdrun –rerun I have forces in a .trr file but VMD only <br>> > reads the coordinates. Can you think of any way to get the forces into <br>> > vmd instead of the coordinates?<br>> <br>> If VMD will only import positions from .trr files, then you could write <br>> a forces-only .trr file and through a code hack or hex edit, force the <br>> frame header to describe them as positions. Or, write a new VMD plugin. <br>> Or, modify the VMD source suitably.<br>> <br>> Mark<br>> _______________________________________________<br>> gmx-users mailing list gmx-users@gromacs.org<br>> http://www.gromacs.org/mailman/listinfo/gmx-users<br>> Please search the archive at http://www.gromacs.org/search before posting!<br>> Please don't post (un)subscribe requests to the list. Use the <br>> www interface or send it to gmx-users-request@gromacs.org.<br>> Can't post? Read http://www.gromacs.org/mailing_lists/users.php<br><br /><hr />Express yourself instantly with MSN Messenger! <a href='http://clk.atdmt.com/AVE/go/onm00200471ave/direct/01/' target='_new'>MSN Messenger</a></body>
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