<div class="gmail_quote"><div>Hey Tanos,</div><div><br></div><div>You must read some papers but my recommendations are:</div><div><br></div><div>GMX 4.0.5 and AMBER99SB forcefield. Look at <a href="http://acpypi.googlecode.com">http://acpypi.googlecode.com</a> where you can find info about how to add amber forcefield to GMX.</div>
<div><br></div><div>Cheers,</div><div>Alan </div><div><br></div><div><br></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">Subject: [gmx-users] Dynamics with DNA<br>
<br>
Hi folks !<br>
Does someone knows how to perform Molecular dynamics simulations of<br>
DNA molecules using GROMACS 3.3.2 ? Is that possible ? With forcefield<br>
should I use ? If it is not possible with GROMACS does someone have a<br>
suggstions of which software colud be used ?<br>
Best whises,<br>
Tanos C. C. Franca.<br>
Rio de Janeiro - RJ<br>
Brazil<br>
<br></blockquote></div>-- <br>Alan Wilter S. da Silva, D.Sc. - CCPN Research Associate<br>Department of Biochemistry, University of Cambridge.<br>80 Tennis Court Road, Cambridge CB2 1GA, UK.<br>>><a href="http://www.bio.cam.ac.uk/~awd28">http://www.bio.cam.ac.uk/~awd28</a><<<br>