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<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span style='font-size:12.0pt'>Hi Nicolas, <o:p></o:p></span></font></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span style='font-size:12.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span style='font-size:12.0pt'>I'll try that too
since I am somewhat familiar with VMD scripting to I may equilibrate a 2X 2Y 1Z
membrane like you specified, <o:p></o:p></span></font></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span style='font-size:12.0pt'>and have a script
find a timeframe where lipid composition fits what I need. <o:p></o:p></span></font></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span style='font-size:12.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span style='font-size:12.0pt'>Thanks,<o:p></o:p></span></font></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span style='font-size:12.0pt'>-Shay<o:p></o:p></span></font></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span style='font-size:12.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span style='font-size:12.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span style='font-size:12.0pt'>-----Original
Message-----<br>
From: gmx-users-bounces@gromacs.org [mailto:gmx-users-bounces@gromacs.org] On
Behalf Of Nicolas Sapay<br>
Sent: Wednesday, June 03, 2009 15:23 PM<br>
To: <st1:PersonName w:st="on">Discussion list for GROMACS users</st1:PersonName><br>
Subject: Re: [gmx-users] Resizing heterogeneous membrane (POPG/POPE mixture)</span></font></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span style='font-size:12.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span style='font-size:12.0pt'>Shay Amram a
écrit</span></font><span dir=RTL></span><span lang=HE dir=RTL><span dir=RTL></span>
:<o:p></o:p></span></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>><o:p> </o:p></span></font></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>>
</span>Dear GROMACS users</font><span dir=RTL></span><span lang=HE dir=RTL><span
dir=RTL></span>,<o:p></o:p></span></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>><o:p> </o:p></span></font></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>>
</span>I have been trying to expand a membrane by a non-integer multiplier</font><span
dir=RTL></span><span dir=RTL><span dir=RTL></span> <span lang=HE><o:p></o:p></span></span></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>>
(</span>for example X1.5). This can be done using</font><span lang=HE dir=RTL><o:p></o:p></span></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>><o:p> </o:p></span></font></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>>
*</span>genbox -cs Membrane.gro -o Expanded_membrane.gro –box 1.5X 1.5Y Z</font><span
dir=RTL></span><span lang=HE dir=RTL><span dir=RTL></span>***<o:p></o:p></span></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>><o:p> </o:p></span></font></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>>
</span>This has worked very good with _homogenous_ membranes, and only very</font><span
dir=RTL></span><span dir=RTL><span dir=RTL></span> <span lang=HE><o:p></o:p></span></span></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>>
</span>short equilibrium times were required to re-equilibrate the membrane</font><span
dir=RTL></span><span dir=RTL><span dir=RTL></span> <span lang=HE><o:p></o:p></span></span></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>>
(~10-20</span>ns</font><span dir=RTL></span><span lang=HE dir=RTL><span
dir=RTL></span>).<o:p></o:p></span></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>><o:p> </o:p></span></font></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>>
</span>Now I am trying to deal the same way with _heterogeneous_ membrane</font><span
dir=RTL></span><span dir=RTL><span dir=RTL></span> <span lang=HE><o:p></o:p></span></span></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>>
(</span>POPG/POPE mixture, Mikko Karttunen et. al</font><span dir=RTL></span><span
lang=HE dir=RTL><span dir=RTL></span>).<o:p></o:p></span></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>><o:p> </o:p></span></font></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>>
</span>When trying to invoke the above command to the POPG/POPE membrane I</font><span
dir=RTL></span><span dir=RTL><span dir=RTL></span> <span lang=HE><o:p></o:p></span></span></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>>
</span>get a membrane with different compositions of lipids in the upper and</font><span
dir=RTL></span><span dir=RTL><span dir=RTL></span> <span lang=HE><o:p></o:p></span></span></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>>
</span>lower leaflets</font><span dir=RTL></span><span lang=HE dir=RTL><span
dir=RTL></span>.<o:p></o:p></span></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>><o:p> </o:p></span></font></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>>
</span>This happens (so I suspect) because the arrangement of lipids in each</font><span
dir=RTL></span><span dir=RTL><span dir=RTL></span> <span lang=HE><o:p></o:p></span></span></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>>
</span>leaflet is somewhat different so that the molecules that "get' to
be</font><span dir=RTL></span><span dir=RTL><span dir=RTL></span> <span
lang=HE><o:p></o:p></span></span></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>>
</span>multiplied do not conserve the</font><span lang=HE dir=RTL><o:p></o:p></span></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>><o:p> </o:p></span></font></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>>
</span>same ratio of different lipids as in the original structure (which has</font><span
dir=RTL></span><span dir=RTL><span dir=RTL></span> <span lang=HE><o:p></o:p></span></span></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>>
</span>ratio of 1:3 POPG/POPE</font><span dir=RTL></span><span lang=HE dir=RTL><span
dir=RTL></span>).<o:p></o:p></span></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>><o:p> </o:p></span></font></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>>
</span>Is there a way to multiply the membrane by a _non-integer_ number AND</font><span
dir=RTL></span><span dir=RTL><span dir=RTL></span> <span lang=HE><o:p></o:p></span></span></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>>
</span>somehow conserve the ratio of different lipid species too</font><span
dir=RTL></span><span lang=HE dir=RTL><span dir=RTL></span>?<o:p></o:p></span></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>><o:p> </o:p></span></font></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>>
</span>Or at the very least, to have both upper and lower leaflets identical</font><span
dir=RTL></span><span lang=HE dir=RTL><span dir=RTL></span> <o:p></o:p></span></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>>
</span>after multiplication? (This, too, would help immensely</font><span
dir=RTL></span><span lang=HE dir=RTL><span dir=RTL></span>).<o:p></o:p></span></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>><o:p> </o:p></span></font></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span style='font-size:12.0pt'>This is quite a
difficult task unfortunately. Personally, I create a</span></font><span
dir=RTL></span><span lang=HE dir=RTL><span dir=RTL></span> <o:p></o:p></span></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span style='font-size:12.0pt'>membrane patch
larger than the one I want (e.g. 2x 2y 1z), load the gro</span></font><span
dir=RTL></span><span lang=HE dir=RTL><span dir=RTL></span> <o:p></o:p></span></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span style='font-size:12.0pt'>file into VMD, then
cut a patch the size/composition I need. That means</span></font><span dir=RTL></span><span
lang=HE dir=RTL><span dir=RTL></span> <o:p></o:p></span></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span style='font-size:12.0pt'>doing selections
like</span></font><span dir=RTL></span><span lang=HE dir=RTL><span dir=RTL></span>:<o:p></o:p></span></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>
</span>set sel [atomselect top "same resid as (x<... and x>... and
y</font><span dir=RTL></span><span lang=HE dir=RTL><span dir=RTL></span><...<o:p></o:p></span></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>
</span>and y</font><span dir=RTL></span><span lang=HE dir=RTL><span dir=RTL></span>>...)"]<o:p></o:p></span></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span style='font-size:12.0pt'>Checking the
number of lipids in each layer</span></font><span dir=RTL></span><span lang=HE
dir=RTL><span dir=RTL></span>:<o:p></o:p></span></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>
[</span>atomselect top "resname DOPG and name P1 and z>... and (same
resid</font><span lang=HE dir=RTL><o:p></o:p></span></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>
</span>as (x<... and x>... and y<... and y>...))"] num</font><span
lang=HE dir=RTL><o:p></o:p></span></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>
[</span>atomselect top "resname DOPG and name P1 and z<... and (same
resid</font><span lang=HE dir=RTL><o:p></o:p></span></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>
</span>as (x<... and x>... and y<... and y>...))"] num</font><span
lang=HE dir=RTL><o:p></o:p></span></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span style='font-size:12.0pt'>Completing the
selection by manually adding the residues I need</span></font><span dir=RTL></span><span
lang=HE dir=RTL><span dir=RTL></span>:<o:p></o:p></span></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>
</span>set sel [atomselect top "same resid as (x<... and x>... and y</font><span
dir=RTL></span><span lang=HE dir=RTL><span dir=RTL></span><...<o:p></o:p></span></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>
</span>and y>...) or resid</font><span dir=RTL></span><span lang=HE dir=RTL><span
dir=RTL></span> ..."]<o:p></o:p></span></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span style='font-size:12.0pt'>Saving the
coordinates</span></font><span dir=RTL></span><span lang=HE dir=RTL><span
dir=RTL></span>:<o:p></o:p></span></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>
</span>animate write pdb sel $sel</font><span lang=HE dir=RTL><o:p></o:p></span></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span style='font-size:12.0pt'>This is a tidy
task and some equilibration is still required after that</span></font><span
dir=RTL></span><span lang=HE dir=RTL><span dir=RTL></span>. <o:p></o:p></span></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span style='font-size:12.0pt'>Basic knowledge
of TCL/VMD scripting languages may be required to</span></font><span dir=RTL></span><span
lang=HE dir=RTL><span dir=RTL></span> <o:p></o:p></span></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span style='font-size:12.0pt'>facilitate/automate
the work</span></font><span dir=RTL></span><span lang=HE dir=RTL><span dir=RTL></span>.<o:p></o:p></span></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'><o:p> </o:p></span></font></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span style='font-size:12.0pt'>Nicolas</span></font><span
lang=HE dir=RTL><o:p></o:p></span></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>><o:p> </o:p></span></font></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>>
</span>Thanks</font><span dir=RTL></span><span lang=HE dir=RTL><span dir=RTL></span>,<o:p></o:p></span></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>><o:p> </o:p></span></font></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>>
-</span>Shay</font><span lang=HE dir=RTL><o:p></o:p></span></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>><o:p> </o:p></span></font></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>>
------------------------------------------------------------------------<o:p></o:p></span></font></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>><o:p> </o:p></span></font></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>>
_______________________________________________<o:p></o:p></span></font></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>>
</span>gmx-users mailing list gmx-users@gromacs.org</font><span lang=HE
dir=RTL><o:p></o:p></span></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>>
</span>http://www.gromacs.org/mailman/listinfo/gmx-users</font><span lang=HE
dir=RTL><o:p></o:p></span></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>>
</span>Please search the archive at http://www.gromacs.org/search before
posting</font><span dir=RTL></span><span lang=HE dir=RTL><span dir=RTL></span>!<o:p></o:p></span></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>>
</span>Please don't post (un)subscribe requests to the list. Use the</font><span
dir=RTL></span><span lang=HE dir=RTL><span dir=RTL></span> <o:p></o:p></span></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>>
</span>www interface or send it to gmx-users-request@gromacs.org</font><span
dir=RTL></span><span lang=HE dir=RTL><span dir=RTL></span>.<o:p></o:p></span></p>
<p class=MsoPlainText dir=LTR style='text-align:left;direction:ltr;unicode-bidi:
embed'><font size=3 face=Arial><span lang=HE dir=RTL style='font-size:12.0pt'>>
</span>Can't post? Read http://www.gromacs.org/mailing_lists/users.php<o:p></o:p></font></p>
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