<span class="Apple-style-span" style="border-collapse: collapse; ">Hi all,<div><br></div><div>I'm simulating with zinc finger protein NMR structure (PDB ID: 2JUN).</div><div><br></div><div>In this protein, only deprotonated HIS and CYS are placed with zinc ions.</div>
<div><br></div><div>So, we tried with AMBER03 force field which has deprotonated CYS as CYM. </div><div><br></div><div>But I couldn't find about deprotonated HIS in ffamber03.rtp file.</div><div><br></div><div><br></div>
<div>Could anyone plz tell me how to use deprotonated HIS?</div><div><br></div><div><br></div><div>Thank you all</div></span><br>-- <br>Thanks & Regards,<br><br> <br>Yuno Lee, Master of Science<br><br>---------------------------------------<br>
Technical Research Personnel<br>Computational Biology & Bioinformatics Lab (CBBL)<br>Environmental Biotechnology National Core Research Center (EB-NCRC)<br>Department of Biochemistry and Division of Applied Life Science (BK21 program),<br>
Gyeongsang National University (GNU)<br>900 Gazwa-dong, Jinju, 660-701 Korea<br>Email: <a href="mailto:yuno@gnu.ac.kr">yuno@gnu.ac.kr</a>, <a href="mailto:youknow@bio.gnu.ac.kr">youknow@bio.gnu.ac.kr</a><br>Homepage: <a href="http://bio.gnu.ac.kr/~youknow">http://bio.gnu.ac.kr/~youknow</a><br>
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