Johnny,<br><br>I have only used CG Builder to convert atomistic models to coarse-grained models. However, I think if you accurately specify your groups of atoms to CG beads in your .RCG file, the plugin should work just fine. <br>
<br>It is also noted on the VMD website you *need* your original atomistic PDB in order for the CG --> AA conversion to work successfully, in addition to your coarse-grained PDB and .rcg file.<br><br>Good luck<br>-L<br>
<br><div class="gmail_quote">2009/8/7 Johnny Lam <span dir="ltr"><<a href="mailto:johntus@berkeley.edu">johntus@berkeley.edu</a>></span><br><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
Hi Edson and Lili,<br>
<br>
Were you guys able to get the VMD CGtool plugin to successful revert your<br>
CG models back to all-atom models? I was just wondering because the<br>
special software developed by the martini folk requires a recompilation of<br>
gromacs. Thanks!<br>
<br>
--Johnny<br>
<br>
-------------------------------------------------<br>
<font color="#888888">Johnny Lam<br>
ISPE Berkeley Chapter External Vice President<br>
Department of Bioengineering<br>
College of Engineering<br>
University of California, Berkeley<br>
Tel: (408) 655- 6829<br>
Email: <a href="mailto:johntus@berkeley.edu">johntus@berkeley.edu</a><br>
</font><div><div></div><div class="h5"><br>
<br>
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