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If you need a fix now, it is one line in src/gmxlib/checkpoint.c:<br>- outputfiles[i].offset = ( ((off_t) offset_high) << 32 ) | ( (off_t) offset_low );<br>+ outputfiles[i].offset = ( ((off_t) offset_high) << 32 ) | ( (off_t) offset_low & mask );<br><br>Berk<br><br>> Date: Mon, 31 Aug 2009 15:39:05 +0200<br>> From: alexander.herz@mytum.de<br>> To: gmx-users@gromacs.org<br>> Subject: Re: [gmx-users] continuation<br>> <br>> Hi,<br>> <br>> yes, the trr is 7GB.<br>> <br>> Alex<br>> <br>> Berk Hess schrieb:<br>> > Hi,<br>> ><br>> > -append yes is incorrect, it should be -append without the yes.<br>> > In this case this error has no effect though.<br>> ><br>> > Is your trr file larger than 2 GB?<br>> > We have fixed a bug with this in the upcoming 4.0.6 release.<br>> ><br>> > Berk<br>> ><br>> > > Date: Fri, 28 Aug 2009 16:48:07 +0200<br>> > > From: alexander.herz@mytum.de<br>> > > To: gmx-users@gromacs.org<br>> > > Subject: [gmx-users] continuation<br>> > ><br>> > > Hi,<br>> > ><br>> > > I'm trying to continue a sim using:<br>> > ><br>> > > old cmd line + -cpi state.cpt -append yes<br>> > ><br>> > > where old cmd line =<br>> > > mpirun -np 1 $GROMACS_T37/mdrun -s shear -c shear_final -g shear_final<br>> > > -o shear<br>> > ><br>> > > All files exist.<br>> > ><br>> > > and I get:<br>> > ><br>> > > -------------------------------------------------------<br>> > > Program mdrun, VERSION 4.0.5<br>> > > Source code file: checkpoint.c, line: 1248<br>> > ><br>> > > Fatal error:<br>> > > Truncation of file shear.trr failed.<br>> > > -------------------------------------------------------<br>> > ><br>> > > What's the problem??<br>> > ><br>> > > Thx,<br>> > > Alex<br>> > > _______________________________________________<br>> > > gmx-users mailing list gmx-users@gromacs.org<br>> > > http://lists.gromacs.org/mailman/listinfo/gmx-users<br>> > > Please search the archive at http://www.gromacs.org/search before<br>> > posting!<br>> > > Please don't post (un)subscribe requests to the list. Use the<br>> > > www interface or send it to gmx-users-request@gromacs.org.<br>> > > Can't post? Read http://www.gromacs.org/mailing_lists/users.php<br>> ><br>> > ------------------------------------------------------------------------<br>> > Express yourself instantly with MSN Messenger! MSN Messenger<br>> > <http://clk.atdmt.com/AVE/go/onm00200471ave/direct/01/><br>> > ------------------------------------------------------------------------<br>> ><br>> > _______________________________________________<br>> > gmx-users mailing list gmx-users@gromacs.org<br>> > http://lists.gromacs.org/mailman/listinfo/gmx-users<br>> > Please search the archive at http://www.gromacs.org/search before posting!<br>> > Please don't post (un)subscribe requests to the list. Use the <br>> > www interface or send it to gmx-users-request@gromacs.org.<br>> > Can't post? Read http://www.gromacs.org/mailing_lists/users.php<br>> <br>> _______________________________________________<br>> gmx-users mailing list gmx-users@gromacs.org<br>> http://lists.gromacs.org/mailman/listinfo/gmx-users<br>> Please search the archive at http://www.gromacs.org/search before posting!<br>> Please don't post (un)subscribe requests to the list. Use the <br>> www interface or send it to gmx-users-request@gromacs.org.<br>> Can't post? Read http://www.gromacs.org/mailing_lists/users.php<br><br /><hr />Express yourself instantly with MSN Messenger! <a href='http://clk.atdmt.com/AVE/go/onm00200471ave/direct/01/' target='_new'>MSN Messenger</a></body>
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