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Dear GMXers,<BR>
I try to generate gro file using genbox, but fail with some errors. Command lines are:<BR>
genbox -ci B.gro -o Bb.gro -nmol 200 -box 3 3 3<BR>
where B.gro is the coordinate file of vinyl alcohol residue.<BR>
The errors are given as bellows. Please give me some hints to cope with these problem. Thanks a lot for any reply.<BR>
<BR>
Sincerely,<BR>
Chaofu Wu<BR>
<BR>
........<BR>
success (now 1400 atoms)!*** glibc detected *** genbox: realloc(): invalid old size: 0x083e6a70 ***<BR>======= Backtrace: =========<BR>/lib/libc.so.6[0xb7db8cb1]<BR>/lib/libc.so.6[0xb7dbb928]<BR>/lib/libc.so.6(__libc_realloc+0x100)[0xb7dbca40]<BR>genbox[0x815bd6c]<BR>======= Memory map: ========<BR>08048000-083d2000 r-xp 00000000 08:09 358678 /usr/local/gromacs/bin/genbox<BR>083d2000-083d9000 rwxp 00389000 08:09 358678 /usr/local/gromacs/bin/genbox<BR>083d9000-21bc3000 rwxp 083d9000 00:00 0 [heap]<BR>b7c00000-b7c21000 rwxp b7c00000 00:00 0<BR>b7c21000-b7d00000 ---p b7c21000 00:00 0<BR>b7d50000-b7d51000 rwxp b7d50000 00:00 0<BR>b7d51000-b7d53000 r-xp 00000000 08:09 17118 /lib/libdl-2.4.so<BR>b7d53000-b7d55000 rwxp 00001000 08:09 17118 /lib/libdl-2.4.so<BR>b7d55000-b7e70000 r-xp 00000000 08:09 17112
/lib/libc-2.4.so<BR>b7e70000-b7e72000 r-xp 0011a000 08:09 17112 /lib/libc-2.4.so<BR>b7e72000-b7e74000 rwxp 0011c000 08:09 17112 /lib/libc-2.4.so<BR>b7e74000-b7e77000 rwxp b7e74000 00:00 0<BR>b7e77000-b7f6b000 r-xp 00000000 08:09 33645 /usr/X11R6/lib/libX11.so.6.2<BR>b7f6b000-b7f6e000 rwxp 000f4000 08:09 33645 /usr/X11R6/lib/libX11.so.6.2<BR>b7f6e000-b7f6f000 rwxp b7f6e000 00:00 0<BR>b7f6f000-b7f84000 r-xp 00000000 08:09 33639 /usr/X11R6/lib/libICE.so.6.4<BR>b7f84000-b7f85000 rwxp 00014000 08:09 33639 /usr/X11R6/lib/libICE.so.6.4<BR>b7f85000-b7f87000 rwxp b7f85000 00:00 0<BR>b7f87000-b7f8f000 r-xp 00000000 08:09 33641 /usr/X11R6/lib/libSM.so.6.0<BR>b7f8f000-b7f90000 rwxp 00007000 08:09 33641 /usr/X11R6/lib/libSM.so.
6.0<BR>b7f90000-b7fb3000 r-xp 00000000 08:09 17120 /lib/libm-2.4.so<BR>b7fb3000-b7fb5000 rwxp 00022000 08:09 17120 /lib/libm-2.4.so<BR>b7fb5000-b7fc6000 r-xp 00000000 08:09 17123 /lib/libnsl-2.4.so<BR>b7fc6000-b7fc8000 rwxp 00010000 08:09 17123 /lib/libnsl-2.4.so<BR>b7fc8000-b7fca000 rwxp b7fc8000 00:00 0<BR>b7fd6000-b7fe2000 r-xp 00000000 08:09 331626 /usr/local/lib/libgcc_s.so.1<BR>b7fe2000-b7fe3000 rwxp 0000c000 08:09 331626 /usr/local/lib/libgcc_s.so.1<BR>b7fe3000-b7fe5000 rwxp b7fe3000 00:00 0<BR>b7fe5000-b7fff000 r-xp 00000000 08:09 17105 /lib/ld-2.4.so<BR>b7fff000-b8001000 rwxp 0001a000 08:09 17105 /lib/ld-2.4.so<BR>bffb3000-bffca000 rwxp bffb3000 00:00 0 [stack]<BR>ffffe000-fffff000 ---p 00
000000 00:00 0 [vdso]<BR>Aborted<BR><BR><br /><hr />聊天+搜索+邮箱 想要轻松出游,手机MSN帮你搞定! <a href='http://mobile.msn.com.cn/' target='_new'>立刻下载！</a></body>
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