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I think the text below "Fatal error:" explains pretty clearly why this interaction is missing.<br><br>Berk<br><br><hr id="stopSpelling">Date: Fri, 25 Sep 2009 13:04:28 +0200<br>From: mariagoranovic@gmail.com<br>To: gmx-users@gromacs.org<br>Subject: [gmx-users] martini simulation problem with unsaturated lipid<br><br>Hello<br><br>I get this error while running Martini:<br><br>A list of missing interactions:<br> G96Angle of 1280 missing 1<br><br>Molecule type 'DUPC'<br>the first 10 missing interactions, except for exclusions:<br>
G96Angle atoms 3 5 6 global 135 137 138<br><br><br>Does this mean that some terms are reallly missing?<br><br>-----------------------------------<br>Program mdrun_mpi, VERSION 4.0.4<br>Source code file: domdec_top.c, line: 341<br>
<br>Fatal error:<br>1 of the 4040 bonded interactions could not be calculated because some atoms involved moved further apart than the multi-body cut-off distance (1.2 nm) or the two-body cut-off distance (1.2 nm), see option -rdd, for pairs and tabulated bonds also see option -ddcheck<br>
-----------------------------------<br clear="all"><br>Maria<br> <br /><hr />Express yourself instantly with MSN Messenger! <a href='http://clk.atdmt.com/AVE/go/onm00200471ave/direct/01/' target='_new'>MSN Messenger</a></body>
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