<div dir="ltr">For VMD you first load a GRO (or pdb) file, and then XTC.<br>The XTC file should contain _exactly_ the same number of atoms as the GRO file. Did you save the entire system in the XTC, or just a specific part of it?<br>
Omer.<br clear="all"> <br>Koby Levy research group,<br>Weizmann Institute of Science. <br>FAX: 972-77-444-7905<br><a href="http://www.weizmann.ac.il/sb/faculty_pages/Levy/">http://www.weizmann.ac.il/sb/faculty_pages/Levy/</a><br>
<br><br><div class="gmail_quote">On Fri, Oct 2, 2009 at 20:39, Paymon Pirzadeh <span dir="ltr"><<a href="mailto:ppirzade@ucalgary.ca">ppirzade@ucalgary.ca</a>></span> wrote:<br><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
Hello,<br>
I ran an NVT simulation from a minimized configuration. The simulation<br>
ended normally and I have a final configuration as well. But, when I<br>
load the initial coordinates and then I want to add data, which is the<br>
xtc file, nothing happens! no frames are loaded. This is while the xtc<br>
file has a reasonable size and when I load it individually in VMD, it<br>
loads the exact number of frames it should (300 frames). Is something<br>
wrong with my outputs or is there something with VMD. This is the second<br>
system I have such a problem.<br>
Regards,<br>
<br>
Payman<br>
<br>
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