<div dir="ltr">Have you tried:<br> echo 0 > zero<br> trjconv bla bla bla < zero<br>You could put more arguments in the file, for example - use the "-center" option, and then echo another 0 into the zero file.<br>
--Omer.<br><br><div class="gmail_quote">On Sun, Oct 4, 2009 at 18:22, ABEL Stephane 175950 <span dir="ltr"><<a href="mailto:Stephane.ABEL@cea.fr">Stephane.ABEL@cea.fr</a>></span> wrote:<br><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
Dear GMX Users,<br>
<br>
echo 0 | /usr/pbs/bin/mpiexec /scratch/name/gromacs-4.0.5/bin/trjconv_mpi -s Peptide_43A1_topol.tpr -f ./XTC/Whole_Traj_43A1.xtc -o ./XTC/Whole_Traj_43A1noPBC.xtc -pbc mol -ur compact. With the selection 0 ("System")<br>
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