yes you can do that by opening the gro file and then loading the .trr file .<br><br>amit<br><br><div class="gmail_quote">On Sun, Oct 11, 2009 at 6:22 PM, Paymon Pirzadeh <span dir="ltr"><<a href="mailto:ppirzade@ucalgary.ca">ppirzade@ucalgary.ca</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">Hello,<br>
How can we use the trr file in VMD? I thought since we ask in the mdp<br>
file to output the velocities, then in VMD we should be able to see<br>
molecules colored based on their velocities through the trajectory<br>
options. Am I correct?<br>
<br>
Payman<br>
<br>
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