Nilesh<br><br>The atom type C is for Carbon and for chlorine is Cl. So, substitute Chlorine's atom type with Cl.<br><br>Chandan<br><br><div class="gmail_quote">On Tue, Nov 17, 2009 at 9:04 AM, Nilesh Dhumal <span dir="ltr"><<a href="mailto:ndhumal@andrew.cmu.edu">ndhumal@andrew.cmu.edu</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">Hello,<br>
My system is having chlorin atoms. Duing pdb2gmx it treat Chlorne atoms as<br>
carbon.<br>
Can you tell me where is the problem. Is there any prblem in my pdb file<br>
Nilesh<br>
<font color="#888888"><br>
<br>
--<br>
gmx-users mailing list <a href="mailto:gmx-users@gromacs.org">gmx-users@gromacs.org</a><br>
<a href="http://lists.gromacs.org/mailman/listinfo/gmx-users" target="_blank">http://lists.gromacs.org/mailman/listinfo/gmx-users</a><br>
Please search the archive at <a href="http://www.gromacs.org/search" target="_blank">http://www.gromacs.org/search</a> before posting!<br>
Please don't post (un)subscribe requests to the list. Use the<br>
www interface or send it to <a href="mailto:gmx-users-request@gromacs.org">gmx-users-request@gromacs.org</a>.<br>
Can't post? Read <a href="http://www.gromacs.org/mailing_lists/users.php" target="_blank">http://www.gromacs.org/mailing_lists/users.php</a><br>
</font></blockquote></div><br><br clear="all"><br>-- <br>Chandan kumar Choudhury<br>NCL, Pune<br>INDIA<br>