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Hi,<br><br>The problem that I fixed last week occured after the use of g_covar -mwa<br>with a fit selection that is not the first N atoms of the system.<br><br>Berk<br><br>> Date: Tue, 17 Nov 2009 18:03:37 +0100<br>> Subject: Re: [gmx-users] segmentation fault in g_anaeig<br>> From: tsjerkw@gmail.com<br>> To: gmx-users@gromacs.org<br>> <br>> Hi Nilu,<br>> <br>> Can you paste the exact commands you entered, and indicate the<br>> selections you made? Oh, and can you check the archives to whether<br>> this is the same problem that was reported a few weeks ago?<br>> <br>> Cheers,<br>> <br>> Tsjerk<br>> <br>> On Tue, Nov 17, 2009 at 5:53 PM, Nilu Chakrabarti<br>> <nilu.chakrabarti@gmail.com> wrote:<br>> > I am used to do PC analysis with g_covar followed by g_anaeig.<br>> > But recently, I am getting segmentation fault with g_anaeig.<br>> > The g_covar gives eigenval.xvg, eigenvec.trr and average.pdb.<br>> ><br>> > In the next step I use those 3 files to generate -<br>> > (1) a projection of each individual vectors on the traj using -proj OR<br>> > (2) a set of pdbs for each vector using -extr -nframes options.<br>> > In each case I am receiving segmentation fault without any other message<br>> > anywhere in a file. So i have no way of figuring out where the problem is.<br>> > I am seeing this problem with gmx v 3.3.3 as well as with v 4.0.5.<br>> ><br>> > I will appreciate any help and suggestions. Thanks a bunch.<br>> ><br>> > --<br>> > Nilu<br>> ><br>> > --<br>> > gmx-users mailing list gmx-users@gromacs.org<br>> > http://lists.gromacs.org/mailman/listinfo/gmx-users<br>> > Please search the archive at http://www.gromacs.org/search before posting!<br>> > Please don't post (un)subscribe requests to the list. Use the<br>> > www interface or send it to gmx-users-request@gromacs.org.<br>> > Can't post? Read http://www.gromacs.org/mailing_lists/users.php<br>> ><br>> <br>> <br>> <br>> -- <br>> Tsjerk A. Wassenaar, Ph.D.<br>> <br>> Computational Chemist<br>> Medicinal Chemist<br>> Neuropharmacologist<br>> -- <br>> gmx-users mailing list gmx-users@gromacs.org<br>> http://lists.gromacs.org/mailman/listinfo/gmx-users<br>> Please search the archive at http://www.gromacs.org/search before posting!<br>> Please don't post (un)subscribe requests to the list. Use the <br>> www interface or send it to gmx-users-request@gromacs.org.<br>> Can't post? Read http://www.gromacs.org/mailing_lists/users.php<br>                                            <br /><hr />New Windows 7: Simplify what you do everyday. <a href='http://windows.microsoft.com/shop' target='_new'>Find the right PC for you.</a></body>
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