<div>Hi Justin,</div><div><br></div>Yes I understand what you are saying.<div><br></div><div>Thank you</div><div><br></div><div>amit<br><br><div class="gmail_quote">On Wed, Dec 2, 2009 at 12:50 PM, Justin A. Lemkul <span dir="ltr"><<a href="mailto:jalemkul@vt.edu">jalemkul@vt.edu</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;"><br>
<br>
Amit Choubey wrote:<div class="im"><br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<br>
<br>
On Wed, Dec 2, 2009 at 12:07 PM, Justin A. Lemkul <<a href="mailto:jalemkul@vt.edu" target="_blank">jalemkul@vt.edu</a> <mailto:<a href="mailto:jalemkul@vt.edu" target="_blank">jalemkul@vt.edu</a>>> wrote:<br>
<br>
<br>
<br>
Amit Choubey wrote:<br>
<br>
Hi Mark,<br>
<br>
That is true. But what does the manual refer to when it says<br>
the first graph is the average, the rest are the individual angles<br>
<br>
what and where are the rest? I am only curious because there<br>
might be a hidden feature that could be useful for me.<br>
<br>
<br>
Read all of the help information; the command in the .xvg file below<br>
shows that you're not yet using the right output options. Hint:<br>
look at the sentence in g_angle -h before the one quoted above, as<br>
well as the -ov flag...<br>
<br>
<br>
-ov flag gives the average value of angle of the group with time. This is not very useful for me right now.<br>
</blockquote>
<br></div>
By using -ov -all, the first column is the average of all groups analyzed, and probably is not useful for your purpose, but the subsequent columns are the value of the chosen angles at each time frame. From these data, you could pretty easily write a script that calculates the distributions by binning.<br>
<font color="#888888">
<br>
-Justin</font><div><div></div><div class="h5"><br>
<br>
-- <br>
========================================<br>
<br>
Justin A. Lemkul<br>
Ph.D. Candidate<br>
ICTAS Doctoral Scholar<br>
MILES-IGERT Trainee<br>
Department of Biochemistry<br>
Virginia Tech<br>
Blacksburg, VA<br>
jalemkul[at]<a href="http://vt.edu" target="_blank">vt.edu</a> | (540) 231-9080<br>
<a href="http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin" target="_blank">http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin</a><br>
<br>
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