Hi, <br>I am forwarding the message and the attachment because I did not see my message in the inbox of gmx-users; I saw only the attached file. Please, can the text be included? Thank you.<br><br><div class="gmail_quote">
---------- Forwarded message ----------<br>From: <b class="gmail_sendername">Lum Nforbi</b> <span dir="ltr"><<a href="mailto:lumngwegia@gmail.com">lumngwegia@gmail.com</a>></span><br>Date: Wed, Dec 9, 2009 at 11:59 AM<br>
Subject: RDF plot. This is weird!<br>To: <a href="mailto:gmx-users@gromacs.org">gmx-users@gromacs.org</a><br><br><br>Dear all,<br><br> I have attached a RDF plot of 2000 molecules of water (SOL is the system name). It does not follow the normal trend. I used the command line below to get this plot:<br>
g_rdf -f wfullmdrun_traj.xtc -s wfullmdrun_extend3.tpr -o wfullmdrun_rdf.xvg<br>
The run took about 1h 45 min to be complete. <br>The plot does not follow the normal trend I see for rdf plot ie first peak higher than the second, so I know something is wrong but I don't know what. Can someone take a look at my graph and tell me what is wrong with my system or with my computation?<br>
<br>Thank you,<br><font color="#888888"><br>Lum<br><br>
</font></div><br>