Thanks, it works when i give proper time. <br><br>Previously i made mistake by giving the time frame number. <br>Rama<br><br><div class="gmail_quote">On Thu, Dec 10, 2009 at 9:13 PM, Justin A. Lemkul <span dir="ltr"><<a href="mailto:jalemkul@vt.edu">jalemkul@vt.edu</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;"><div class="im"><br>
<br>
Ramachandran G wrote:<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
Thanks for your help.<br>
I have tried the command<br>
<br>
trjconv -f traj.trr -s AFP-500ps.tpr -b 87001 -e 99000 -o test.gro<br>
<br>
but nothing was written on output file(test.gro) and got the message<br>
<br>
"WARNING no output, trajectory ended at 500"<br>
<br>
Am i doing it right?<br>
<br>
</blockquote>
<br></div>
Obviously not. If your trajectory ended at 500 ps, then frames at 87001 and 99000 ps clearly don't exist.<br><font color="#888888">
<br>
-Justin</font><div><div></div><div class="h5"><br>
<br>
-- <br>
========================================<br>
<br>
Justin A. Lemkul<br>
Ph.D. Candidate<br>
ICTAS Doctoral Scholar<br>
MILES-IGERT Trainee<br>
Department of Biochemistry<br>
Virginia Tech<br>
Blacksburg, VA<br>
jalemkul[at]<a href="http://vt.edu" target="_blank">vt.edu</a> | (540) 231-9080<br>
<a href="http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin" target="_blank">http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin</a><br>
<br>
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</div></div></blockquote></div><br><br clear="all"><br>-- <br>Postdoctoral Research Scholar,<br>Department of Chemistry,<br>University of Nevada, Reno.<br>