<div style="font-size: 16px; font-family: 'times new roman'"><div><br /></div><div>On 01/01/10, <b class="name">venkat </b><vkabas@yahoo.com> wrote:</div><blockquote cite="mid:171387.55066.qm@web34307.mail.mud.yahoo.com" class="iwcQuote" style="padding-left: 13px; margin-left: 0px; border-left: #00f 1px solid" type="cite">I did installed fftw , not sure it is completed. <br /> <br />while doing make command , got the following error mesage<br /><br />$ configure -enable-threads --enable-float--prefix=/home/pgm/fftw</blockquote><div ><br/></div><div>This command is hopelessly garbled. Computers are literal, and so must you be when using them. Like most GNU tools, configure commands take double hyphens for options, and a space between options. GROMACS commands take single hyphens for their options, however.</div><div> </div><div>Mark</div><div ><br/></div><blockquote cite="mid:171387.55066.qm@web34307.mail.mud.yahoo.com" class="iwcQuote" style="padding-left: 13px; margin-left: 0px; border-left: #00f 1px solid" type="cite"><div class="mimepart text plain"><br />$make<br /><br />cp fftw_wisdom.1 fftwf-wisdom.1<br />make all-am<br />/bin/sh ../libtool --tag=CC --mode=link gcc -std=gnu99 -O3 -fomit-frame-pointer -fstrict-aliasing -ffast-math -mpentiumpro -pthread -L/home/vk/pgm/fftw/lib -o fftwf-wisdom fftw-wisdom.o ../tests/bench.o ../tests/fftw-bench.o ../threads/libfftw3f_threads.la ../libfftw3f.la ../libbench2/libbench2.a -lm <br />libtool: link: gcc -std=gnu99 -O3 -fomit-frame-pointer -fstrict-aliasing -ffast-math -mpentiumpro -pthread -o fftwf-wisdom fftw-wisdom.o ../tests/bench.o ../tests/fftw-bench.o -L/home/vk/pgm/fftw/lib ../threads/.libs/libfftw3f_threads.a ../.libs/libfftw3f.a ../libbench2/libbench2.a -lm -pthread<br />Making all in m4<br />make[2]: Nothing to be done for `all'.<br /><br />any help<br /><br /><br /><br />----- Original Message ----<br />From: Justin A. Lemkul <jalemkul@vt.edu><br />To: Discussion list for GROMACS users <gmx-users@gromacs.org><br />Sent: Wed, December 30, 2009 9:54:42 PM<br />Subject: Re: [gmx-users] gromacs 4.06 binary for linux -redhat<br /><br /><br /><br />venkat wrote:<br />> <br />> <br />> Hi <br />> I am new to GROMACS, like to use it. I would be appreciate if anyone can direct me to the right place where I could<br />> get the linux binary either x32/x64 - redhat.<br />> <br /><br />Binaries for newer versions probably haven't been made yet. Your subject line points to version 4.0.6, which was a broken release anyway, and was replaced by version 4.0.7.<br /><br />> I could not compile the source cause it is looking for FFTW etc.,. <br /><br />Then you should follow the step-by-step installation instructions. FFT libraries are a prerequisite for Gromacs. Please see the following:<br /><br /><a _zipIdx="463" href="http://www.gromacs.org/index.php?title=Download_%26_Installation/Installation_Instructions" target="_blank">http://www.gromacs.org/index.php?title=Download_%26_Installation/Installation_Instructions</a><br /><br />-Justin<br /><br />> thanks<br />> venkat<br />> <br />> <br />> <br /><br />-- ========================================<br /><br />Justin A. Lemkul<br />Ph.D. Candidate<br />ICTAS Doctoral Scholar<br />MILES-IGERT Trainee<br />Department of Biochemistry<br />Virginia Tech<br />Blacksburg, VA<br />jalemkul[at]vt.edu | (540) 231-9080<br /><a _zipIdx="463" href="http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin" target="_blank">http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin</a><br /><br />========================================<br />-- gmx-users mailing list gmx-users@gromacs.org<br /><a _zipIdx="463" href="http://lists.gromacs.org/mailman/listinfo/gmx-users" target="_blank">http://lists.gromacs.org/mailman/listinfo/gmx-users</a><br />Please search the archive at <a _zipIdx="463" href="http://www.gromacs.org/search" target="_blank">http://www.gromacs.org/search</a> before posting!<br />Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-request@gromacs.org.<br />Can't post? Read <a _zipIdx="463" href="http://www.gromacs.org/mailing_lists/users.php" target="_blank">http://www.gromacs.org/mailing_lists/users.php</a><br /><br /><br /><br /> <br />-- <br />gmx-users mailing list gmx-users@gromacs.org<br /><a _zipIdx="463" href="http://lists.gromacs.org/mailman/listinfo/gmx-users" target="_blank">http://lists.gromacs.org/mailman/listinfo/gmx-users</a><br />Please search the archive at <a _zipIdx="463" href="http://www.gromacs.org/search" target="_blank">http://www.gromacs.org/search</a> before posting!<br />Please don't post (un)subscribe requests to the list. Use the <br />www interface or send it to gmx-users-request@gromacs.org.<br />Can't post? Read <a _zipIdx="463" href="http://www.gromacs.org/mailing_lists/users.php" target="_blank">http://www.gromacs.org/mailing_lists/users.php</a><br /></div></blockquote></div>