Oh. You are correct. I've gotten a little rusty. Thanks!<br><br>
<div class="gmail_quote">On Tue, Jan 12, 2010 at 9:10 AM, Justin A. Lemkul <span dir="ltr"><<a href="mailto:jalemkul@vt.edu">jalemkul@vt.edu</a>></span> wrote:<br>
<blockquote style="BORDER-LEFT: #ccc 1px solid; MARGIN: 0px 0px 0px 0.8ex; PADDING-LEFT: 1ex" class="gmail_quote">
<div class="im"><br><br>Arden Perkins wrote:<br>
<blockquote style="BORDER-LEFT: #ccc 1px solid; MARGIN: 0px 0px 0px 0.8ex; PADDING-LEFT: 1ex" class="gmail_quote">Also, you can type " -h " in your terminal and it will bring up a list of commands and options for the program and can usually explain what they mean/do. For example: -h pdb2gmx <br>
</blockquote><br></div>Such a command is incorrect. The -h flag must follow the Gromacs tool, otherwise you will undoubtedly receive "-h: command not found."<br><br>-Justin<br><br>
<blockquote style="BORDER-LEFT: #ccc 1px solid; MARGIN: 0px 0px 0px 0.8ex; PADDING-LEFT: 1ex" class="gmail_quote">Arden Perkins
<div class="im"><br>On Tue, Jan 12, 2010 at 4:17 AM, leila karami <<a href="mailto:karami.leila1@gmail.com" target="_blank">karami.leila1@gmail.com</a> <mailto:<a href="mailto:karami.leila1@gmail.com" target="_blank">karami.leila1@gmail.com</a>>> wrote:<br>
<br> Hi<br> How is determined distance from solute atom to the edge of the box<br> in editconf command (what criterion)?<br> <br> Any help will highly appreciated!<br><br><br> --<br> gmx-users mailing list <a href="mailto:gmx-users@gromacs.org" target="_blank">gmx-users@gromacs.org</a><br>
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<div class="im"><br>-- <br>========================================<br><br>Justin A. Lemkul<br>Ph.D. Candidate<br>ICTAS Doctoral Scholar<br>MILES-IGERT Trainee<br>Department of Biochemistry<br>Virginia Tech<br>Blacksburg, VA<br>
jalemkul[at]<a href="http://vt.edu/" target="_blank">vt.edu</a> | (540) 231-9080<br><a href="http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin" target="_blank">http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin</a><br>
<br>========================================<br>-- <br></div>
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