<div>I believe pdb files (protein data bank) are only for peptides, so unless you are simulating a peptide you will not need any pdb files for your SiO2. Your structure file (.gro) for SiO2 may be in the fftw library files (or whatever forcefield you're using). Hope that helps.</div>
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<div>Arden Perkins<br><br></div>
<div class="gmail_quote">On Tue, Jan 12, 2010 at 3:23 AM, Batistakis, C. <span dir="ltr"><<a href="mailto:c.batistakis@tue.nl">c.batistakis@tue.nl</a>></span> wrote:<br>
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<p class="MsoNormal">Dear all</p>
<p class="MsoNormal"> </p>
<p class="MsoNormal">I am a new user of Gromacs. I am interested to simulate amorphous SiO<sub>2 </sub>and I would like to know if someone can send me the .pdb and .top files.</p>
<p class="MsoNormal"> </p>
<p class="MsoNormal">Thanks in advance</p>
<p class="MsoNormal"> </p>
<p class="MsoNormal">Chrysostomos</p></div></div><br>--<br>gmx-users mailing list <a href="mailto:gmx-users@gromacs.org">gmx-users@gromacs.org</a><br><a href="http://lists.gromacs.org/mailman/listinfo/gmx-users" target="_blank">http://lists.gromacs.org/mailman/listinfo/gmx-users</a><br>
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