thanks dear justin'<br><br>it is right that the output of the analysis tools generally writes axis labels and data set legends. in hblife.xyg file is written that x axis label "Time (ps)" and the last time is written 14300.001 <span dir="rtl">whereas my simulated time is 40000 ps not 143000.00 ps </span><br>
i send you this file<br><br>Best wishes,<br>Afsaneh<br><br><div class="gmail_quote">On Thu, Jan 28, 2010 at 6:04 PM, Justin A. Lemkul <span dir="ltr"><<a href="mailto:jalemkul@vt.edu">jalemkul@vt.edu</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;"><div class="im"><br>
<br>
afsaneh maleki wrote:<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
Hi,<br>
<br>
would you please elaborate the first column in the hblife.xvg file?<br>
hblife.xyg is the output of the following command:<br>
g_hbond -life hblife.xvg<br>
this column don't show the real time in simulated system.what are these times?<br>
<br>
</blockquote>
<br></div>
Check the headers in the .xvg file; the output of the analysis tools generally writes axis labels and data set legends. If it still doesn't make sense, post a snippet of your file.<br>
<br>
-Justin<br>
<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
thanks in advance,<br>
Afsaneh<br>
<br>
</blockquote>
<br>
-- <br>
========================================<br>
<br>
Justin A. Lemkul<br>
Ph.D. Candidate<br>
ICTAS Doctoral Scholar<br>
MILES-IGERT Trainee<br>
Department of Biochemistry<br>
Virginia Tech<br>
Blacksburg, VA<br>
jalemkul[at]<a href="http://vt.edu" target="_blank">vt.edu</a> | (540) 231-9080<br>
<a href="http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin" target="_blank">http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin</a><br>
<br>
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