<html>
<head>
<style><!--
.hmmessage P
{
margin:0px;
padding:0px
}
body.hmmessage
{
font-size: 10pt;
font-family:Verdana
}
--></style>
</head>
<body class='hmmessage'>
Hi,<br><br>I fixed this bug in 4.0.7.<br><br>Berk<br><br><hr id="stopSpelling">From: regafan@hotmail.com<br>To: gmx-users@gromacs.org<br>Date: Tue, 23 Feb 2010 15:40:07 +0000<br>Subject: [gmx-users] problem in g_rdf using only x and y<br><br>
<style>
.ExternalClass .ecxhmmessage P
{padding:0px;}
.ExternalClass body.ecxhmmessage
{font-size:10pt;font-family:Verdana;}
</style>
Hi,<br>I am trying to calculate g_rdf using only the x and y components of the distance (gromacs 4.0.4):<br><br>g_rdf -f trajectory.xtc -s production1.tpr -n index.ndx -o rdf_Na_xy.xvg -com -norm -pbc -xy and the calculations stays at the window:<br><br>Select a group: 1<br>Selected 1: 'UNK'<br>Select a group: 4<br>Selected 4: 'Na'<br>Reading frame 0 time 0.000 <br><br>for days...(I had to kill it after 4 days).<br><br>Using the same order without -xy takes only 10 minutes.<br><br>Is there anything wrong with the commands I am using? Or maybe is there a bug in the -xy option?<br><br>Thank you very much for your help, in advance.<br><br>Best wishes,<br><br>Rebeca Garcia.<br><a href="http://serviciosmoviles.es.msn.com/hotmail/movistar.aspx"></a> <br><hr>¿Quieres tener a tus amigos de Facebook en Messenger? <a href="http://vivelive.com/feedfacebook/"> ¡Clic AQUÍ!</a> <br /><hr />New Windows 7: Find the right PC for you. <a href='http://windows.microsoft.com/shop' target='_new'>Learn more.</a></body>
</html>