Dear Sir <br><div class="gmail_quote"><br>I am doing a coarse grain MD of a membrane protein using Martini force field and parameters . In course I am facing problem in understanding " how the harmonic
restraints will be applied to mimic secondary structure H- Bonds of the
atomic structure to the coarse grain model to maintain secondary structure element " . Is this will be specified
in the 'mdp' file .<br> <br><br>Thanks & Regards <br><font color="#888888">Ajeeta <br>
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