Hi,<br><br>How do i calculate local destabilization of bilayer?<br> I can calculate
the thickness of the bilayer in the membrane protein with GridMAT-MD but i can't
compare it with thickness of pure bilayer. Would you please elaborate
it clearly?<br><br>when i calculated thickness of bilayer in membrane protein with GridMAT-MD i do following as:<br><br>./GridMAT-MD.pl param_example<br>perl <a href="http://convert_to_gnuplot.pl">convert_to_gnuplot.pl</a> 20*20_average.dat 20 20<br>
gnuplot<br>splot ' 20*20_average.dat' matrix using(1+$1):(1+$2):3<br>set pm3d map<br>replot<br><br><br>but "20x20_average_pbc.dat" contains a single column of numbers and 400 raw line. is it correct? <br>
<br clear="all">Thanks very much in advance,<br clear="all">Afsaneh Maleki<br>