<p>Carolina and Javier wrote:<br /></p><p> </p><!--[if gte mso 9]><xml> <w:WordDocument> <w:View>Normal</w:View> <w:Zoom>0</w:Zoom> <w:Compatibility> <w:BreakWrappedTables/> <w:SnapToGridInCell/> <w:WrapTextWithPunct/> <w:UseAsianBreakRules/> </w:Compatibility> <w:BrowserLevel>MicrosoftInternetExplorer4</w:BrowserLevel> </w:WordDocument> </xml><![endif]--> <!-- /* Style Definitions */ p.MsoNormal, li.MsoNormal, div.MsoNormal {mso-style-parent:""; margin:0in; margin-bottom:.0001pt; mso-pagination:widow-orphan; font-size:12.0pt; font-family:"Times New Roman"; mso-fareast-font-family:"Times New Roman";} a:link, span.MsoHyperlink {color:blue; text-decoration:underline; text-underline:single;} a:visited, span.MsoHyperlinkFollowed {color:purple; text-decoration:underline; text-underline:single;} pre {margin:0in; margin-bottom:.0001pt; mso-pagination:widow-orphan; font-size:10.0pt; font-family:"Courier New"; mso-fareast-font-family:"Times New Roman";} tt {font-family:"Courier New"; mso-ascii-font-family:"Courier New"; mso-fareast-font-family:"Times New Roman"; mso-hansi-font-family:"Courier New"; mso-bidi-font-family:"Courier New";} @page Section1 {size:8.5in 11.0in; margin:1.0in 1.25in 1.0in 1.25in; mso-header-margin:.5in; mso-footer-margin:.5in; mso-paper-source:0;} div.Section1 {page:Section1;} --> <!--[if gte mso 10]> <style> /* Style Definitions */ table.MsoNormalTable {mso-style-name:"Tabla normal"; mso-tstyle-rowband-size:0; mso-tstyle-colband-size:0; mso-style-noshow:yes; mso-style-parent:""; mso-padding-alt:0in 5.4pt 0in 5.4pt; mso-para-margin:0in; mso-para-margin-bottom:.0001pt; mso-pagination:widow-orphan; font-size:10.0pt; font-family:"Times New Roman";} </style> <![endif]--><pre><strong>We have the same error that</strong><strong> Nitu sharma and Wara Boon. </strong>We have successfully installed the gromacs 4.0.7, on Redhad 4 and 5 but the problem is the same. <strong>we review all, every step of the installation, but continued the error.</strong></pre> <p class="MsoNormal"> </p> <p class="MsoNormal">This program run on Redhad xxxx?</p> <pre>Who can help me to solve this problem?</pre> <p class="MsoNormal"><span style="font-size: 10pt"> </span></p> <p class="MsoNormal"><span style="font-size: 10pt"> </span></p> <pre><strong>nitu sharma wrote: (<a href="http://www.mail-archive.com/gmx-users@gromacs.org/msg19562.html">http://www.mail-archive.com/gmx-users@gromacs.org/msg19562.html</a>)</strong></pre> <p class="MsoNormal"><span style="font-size: 10pt"> </span></p> <p class="MsoNormal"><span style="font-size: 10pt">I have successfully installed the gromacs 4.0.3 it is working but the problem is when I want to run the gromacs demo during processing when I put the command "grompp -v" the output like this:</span></p> <p class="MsoNormal"><span style="font-size: 10pt"> </span></p> <pre>There were 2 notes</pre><pre> </pre><pre>There was 1 warning</pre><pre> </pre><pre>-------------------------------------------------------</pre><pre>Program grompp, VERSION 4.0.3</pre><pre>Source code file: gmx_fatal.c, line: 481</pre><pre> </pre><pre>Fatal error:</pre><pre>Too many warnings (1), grompp terminated.</pre> <div style="border-width: medium medium 1pt; border-style: none none solid; border-color: -moz-use-text-color -moz-use-text-color windowtext; padding: 0in 0in 1pt"><pre style="border: medium none; padding: 0in">If you are sure all warnings are harmless, use the -maxwarn option.</pre></div> <pre> </pre><pre> </pre><pre><em>in these condition, gromacs generate "mdout.mdp" file but no generate</em></pre><pre>><em> "topol.tpr" file.</em></pre><pre>><em> </em></pre><pre>><em> </em></pre><pre>><em> when I used this options:<span> </span>grompp -v -maxwarn 1</em></pre><pre>><em> the pre-processing is done and the topol.tpr file is constracted.</em></pre><pre>><em> </em></pre><pre>><em> Is it possible and correct to use of "-maxwarn 1" for run these</em></pre><pre>><em> tutorial example or not?!?</em></pre><pre><em> </em></pre><pre><strong>wara boon wrote: <a href="http://oldwww.gromacs.org/pipermail/gmx-users/2009-June/042751.html">http://oldwww.gromacs.org/pipermail/gmx-users/2009-June/042751.html</a></strong></pre><pre> </pre><pre><em>I pull molecule into membrane by MD simulations but it error about</em></pre><pre><em>Program grompp_mpi, VERSION 4.0.2</em></pre><pre>><em> </em></pre><pre>><em> Source code file: gmx_fatal.c, line: 481</em></pre><pre>><em> </em></pre><pre>><em><span> </span></em></pre><pre>><em> </em></pre><pre>><em> Fatal error:</em></pre><pre>><em> </em></pre><pre>><em> Too many warnings (1), grompp_mpi terminated.</em></pre><pre>><em> </em></pre><pre>><em> If you are sure all warnings are harmless, use the -maxwarn option.</em></pre>