<br>HI<br> <br>1. dssp -n index.ndx <br>=> only atom numbers of one residue in the index.ndx <br>=> can dssp decide the exact second structure for the only one residue without considering other residues of protein?<br>
=> can i get the same second structure for the residue with [ dssp -n one-residue.ndx ] and [dssp -n protein-main chain + H .ndx ] ?<br><br><br>2. The legend indicates the color of different second structure is shown under the secondary-structure plot.<br>
I don't want to change the colors assigned, but one legend is half-shown. The picture of legend is cut. <br> How can I get that legend full-shown.<br><br><br>
<br>
3. With the option<br>
-sss string HE<br>
<br>HE = helix ? <br><br><br>Thanks<br>Lin<br>