<div><br></div><div><br></div>Hi<br><div><br></div><div><span class="Apple-style-span" style="font-family: Times; font-size: medium; ">g_sas computes hydrophobic, hydrophilic and total solvent accessible surface area.</span></div>
<div><font class="Apple-style-span" face="Times"><span class="Apple-style-span" style="font-size: medium;"><br></span></font></div><div><font class="Apple-style-span" face="Times"><span class="Apple-style-span" style="font-size: medium;">I chose => protein for calculation group</span></font></div>
<div><font class="Apple-style-span" face="Times"><span class="Apple-style-span" style="font-size: medium;"> => protein for output group</span></font></div><div><font class="Apple-style-span" face="Times"><span class="Apple-style-span" style="font-size: medium;"><br>
</span></font></div><div><font class="Apple-style-span" face="Times"><span class="Apple-style-span" style="font-size: medium;">what does it define "hydrophobic solvent accessible surface area"?</span></font></div>
<div><font class="Apple-style-span" face="Times"><span class="Apple-style-span" style="font-size: medium;">=> does that, the surface area, enclose the hydrophobic atoms/residues?</span></font></div><div><font class="Apple-style-span" face="Times"><span class="Apple-style-span" style="font-size: medium;"><br>
</span></font></div><div><font class="Apple-style-span" face="Times"><span class="Apple-style-span" style="font-size: medium;">what does it define "hydrophilic solvent accessible surface area"?</span></font></div>
<div><font class="Apple-style-span" face="Times"><span class="Apple-style-span" style="font-size: medium;"> => does that, the surface area, enclose the hydrophilic atoms/residues?</span></font></div><div><font class="Apple-style-span" face="Times"><span class="Apple-style-span" style="font-size: medium;"><br>
</span></font></div><div><font class="Apple-style-span" face="Times"><span class="Apple-style-span" style="font-size: medium;"><br></span></font></div><div><font class="Apple-style-span" face="Times"><span class="Apple-style-span" style="font-size: medium;"><span class="Apple-style-span" style="font-family: arial; font-size: small; "><div>
<font class="Apple-style-span" face="Times"><span class="Apple-style-span" style="font-size: medium; ">what does it define "total solvent accessible surface area"?</span></font></div><div><font class="Apple-style-span" face="Times"><span class="Apple-style-span" style="font-size: medium; "> => does that, the surface area, enclose the total surface of the protein?</span></font></div>
<div><font class="Apple-style-span" face="Times"><span class="Apple-style-span" style="font-size: medium;"><br></span></font></div></span></span></font></div><div><font class="Apple-style-span" face="Times"><span class="Apple-style-span" style="font-size: medium;"><br>
</span></font></div><div><font class="Apple-style-span" face="Times"><span class="Apple-style-span" style="font-size: medium;"><br></span></font></div><div><font class="Apple-style-span" face="Times"><span class="Apple-style-span" style="font-size: medium;">I got hydrophobic SAS is greater than hydrophilic SAS.</span></font></div>
<div><font class="Apple-style-span" face="Times"><span class="Apple-style-span" style="font-size: medium;">Isn't correct ?</span></font></div><div><font class="Apple-style-span" face="Times"><span class="Apple-style-span" style="font-size: medium;">I am supposing that hydrophobic atoms/residues are within the protein.</span></font></div>
<div><font class="Apple-style-span" face="Times"><span class="Apple-style-span" style="font-size: medium;">And, hydrophilic atoms/residues are on the surface of the protein.</span></font></div><div><font class="Apple-style-span" face="Times"><span class="Apple-style-span" style="font-size: medium;"><br>
</span></font></div><div><font class="Apple-style-span" face="Times"><span class="Apple-style-span" style="font-size: medium;"><br></span></font></div><div><font class="Apple-style-span" face="Times"><span class="Apple-style-span" style="font-size: medium;">Then, how can "hydrophobic SAS is greater than hydrophilic SAS" ?</span></font></div>
<div><font class="Apple-style-span" face="Times"><span class="Apple-style-span" style="font-size: medium;"><br></span></font></div><div><font class="Apple-style-span" face="Times"><span class="Apple-style-span" style="font-size: medium;">Thank you</span></font></div>
<div><font class="Apple-style-span" face="Times"><span class="Apple-style-span" style="font-size: medium;">Lin</span></font></div><div><font class="Apple-style-span" face="Times"><span class="Apple-style-span" style="font-size: medium;"><br>
</span></font></div><div><font class="Apple-style-span" face="Times"><span class="Apple-style-span" style="font-size: medium;"><br></span></font></div><div><font class="Apple-style-span" face="Times"><span class="Apple-style-span" style="font-size: medium;"><br>
</span></font></div><div><font class="Apple-style-span" face="Times"><span class="Apple-style-span" style="font-size: medium;"><br></span></font></div><div><font class="Apple-style-span" face="Times"><span class="Apple-style-span" style="font-size: medium;"><br>
</span></font></div><div><font class="Apple-style-span" face="Times"><span class="Apple-style-span" style="font-size: medium;"><br></span></font></div><div><font class="Apple-style-span" face="Times"><span class="Apple-style-span" style="font-size: medium;"><br>
</span></font></div><div><font class="Apple-style-span" face="Times"><span class="Apple-style-span" style="font-size: medium;"><br></span></font></div><div><font class="Apple-style-span" face="Times"><span class="Apple-style-span" style="font-size: medium;"> </span></font></div>
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